Desulfovibrio vulgaris Hildenborough Module 347 Residual: 0.44

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Summary

Residual: 0.44 Score: -50.4366 version: dvh_cmonkey_11_Mar_02

Members

DVU0165 Oligopeptide/dipeptide ABC transporter, ATP-binding protein

Details for DVU0165 - Oligopeptide/dipeptide ABC transporter, ATP-binding protein

GO Terms: GO:0005524, GO:0016887, GO:0016020, GO:0015197

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0165

Tuberculist Genomic Region

DVU0550 High-affinity branched-chain amino acid ABC transporter, ATP binding protein

Details for DVU0550 - High-affinity branched-chain amino acid ABC transporter, ATP binding protein

GO Terms: GO:0005524, GO:0016887

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0550

Tuberculist Genomic Region

DVU0166 Oligopeptide/dipeptide ABC transporter, ATP-binding protein

Details for DVU0166 - Oligopeptide/dipeptide ABC transporter, ATP-binding protein

GO Terms: GO:0005524, GO:0016887, GO:0016020, GO:0015197

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0166

Tuberculist Genomic Region

DVU0551 High-affinity branched-chain amino acid ABC transporter ATP-binding protein

Details for DVU0551 - High-affinity branched-chain amino acid ABC transporter ATP-binding protein

GO Terms: GO:0005524, GO:0016887

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0551

Tuberculist Genomic Region

DVU0167 Oligopeptide/dipeptide ABC transporter, permease protein

Details for DVU0167 - Oligopeptide/dipeptide ABC transporter, permease protein

GO Terms: GO:0016021, GO:0005886, GO:0006810

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0167

Tuberculist Genomic Region

DVU0713 Branched-chain amino acid ABC transporter, permease protein

Details for DVU0713 - Branched-chain amino acid ABC transporter, permease protein

GO Terms: GO:0016021, GO:0005886, GO:0005215

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0713

Tuberculist Genomic Region

DVU0168 Oligopeptide/dipeptide ABC transporter, permease protein

Details for DVU0168 - Oligopeptide/dipeptide ABC transporter, permease protein

GO Terms: GO:0016021, GO:0006810

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0168

Tuberculist Genomic Region

DVU0714 Branched-chain amino acid ABC transporter, permease protein

Details for DVU0714 - Branched-chain amino acid ABC transporter, permease protein

GO Terms: GO:0016021, GO:0005886, GO:0005215

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0714

Tuberculist Genomic Region

DVU0279 Sulfate permease family protein

Details for DVU0279 - Sulfate permease family protein

GO Terms: GO:0016021, GO:0008271

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0279

Tuberculist Genomic Region

DVU1245 ABC transporter, ATP-binding protein

Details for DVU1245 - ABC transporter, ATP-binding protein

GO Terms: GO:0005524, GO:0016887

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1245

Tuberculist Genomic Region

DVU0384 Flavoredoxin

Details for DVU0384 - Flavoredoxin

GO Terms: GO:0010181, GO:0042602

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0384

Tuberculist Genomic Region

DVU1291 Uncharacterized protein

Details for DVU1291 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1291

Tuberculist Genomic Region

DVU0390 Glycolate oxidase, subunit GlcD, putative

Details for DVU0390 - Glycolate oxidase, subunit GlcD, putative

GO Terms: GO:0008762, GO:0050660

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0390

Tuberculist Genomic Region

DVU2341 Amino acid ABC transproter, permease protein, His/Glu/Gln/Arg/opine family

Details for DVU2341 - Amino acid ABC transproter, permease protein, His/Glu/Gln/Arg/opine family

GO Terms: GO:0016021, GO:0005886, GO:0005215

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2341

Tuberculist Genomic Region

DVU0548 High-affinity branched-chain amino acid ABC transporter, permease protein

Details for DVU0548 - High-affinity branched-chain amino acid ABC transporter, permease protein

GO Terms: GO:0016021, GO:0005886, GO:0005215

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0548

Tuberculist Genomic Region

DVUA0069 GtrA family protein, selenocysteine-containing

Details for DVUA0069 - GtrA family protein, selenocysteine-containing

GO Terms: GO:0016021, GO:0000271, GO:0006810

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVUA0069

Tuberculist Genomic Region

DVU0549 High-affinity branched-chain amino acid ABC transporter, permease protein

Details for DVU0549 - High-affinity branched-chain amino acid ABC transporter, permease protein

GO Terms: GO:0016021, GO:0005886, GO:0005215

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0549

Tuberculist Genomic Region

DVUA0070 Conserved domain protein

Details for DVUA0070 - Conserved domain protein

GO Terms: GO:0008168

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVUA0070

Tuberculist Genomic Region

Displaying 1 - 18 of 18

Motifs

Motif 1: e-value: 0.5 e-value: 19

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

DVU2195

Uncharacterized protein
 down-regulates -0.12

DVU2195

DVU2275

Sigma-54 dependent transcriptional regulator
 up-regulates 0.13

DVU2275

DVU2567

Uncharacterized protein
 down-regulates -0.14

DVU2567

DVU3066

DNA-binding protein
 down-regulates -0.13

DVU3066

DVU3142

Sigma-54 dependent transcriptional regulator
 down-regulates -0.12

DVU3142

DVU3255

Transcriptional regulator, CopG family
 up-regulates 0.18

DVU3255
[field_regulator_taxonomy_regulat_1] down-regulates -0.21

Formate
[field_regulator_taxonomy_regulat_1] up-regulates 0.15

Thiosulfate

GO Enrichment

Category: CC
Category GO ID GO Term Annotated Expected Significant p-value
CC GO:0016021 integral component of membrane 184 4.21 9 0.0010
CC GO:0031224 intrinsic component of membrane 184 4.21 9 0.0010
CC GO:0044425 membrane part 188 4.31 9 0.0012
CC GO:0016020 membrane 270 6.18 9 0.0327
Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0032553 ribonucleotide binding 345 2.15 6 0.0062
MF GO:0097367 carbohydrate derivative binding 345 2.15 6 0.0062
MF GO:0043168 anion binding 371 2.32 6 0.0092
MF GO:0000166 nucleotide binding 377 2.35 6 0.0100
MF GO:1901265 nucleoside phosphate binding 377 2.35 6 0.0100
MF GO:0036094 small molecule binding 383 2.39 6 0.0109
MF GO:0043167 ion binding 422 2.64 6 0.0182
MF GO:0005524 ATP binding 301 1.88 5 0.0206
MF GO:0032559 adenyl ribonucleotide binding 303 1.89 5 0.0212
MF GO:0030554 adenyl nucleotide binding 304 1.90 5 0.0215
MF GO:0035639 purine ribonucleoside triphosphate bindi... 325 2.03 5 0.0286
MF GO:0001882 nucleoside binding 327 2.04 5 0.0294
MF GO:0001883 purine nucleoside binding 327 2.04 5 0.0294
MF GO:0032549 ribonucleoside binding 327 2.04 5 0.0294
MF GO:0032550 purine ribonucleoside binding 327 2.04 5 0.0294
MF GO:0008762 UDP-N-acetylmuramate dehydrogenase activ... 5 0.03 1 0.0309
MF GO:0032555 purine ribonucleotide binding 332 2.07 5 0.0313
MF GO:0017076 purine nucleotide binding 333 2.08 5 0.0317

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