Methanococcus maripaludis S2 Module 77 Residual: 0.40

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Summary

Residual: 0.40 Score: -10.657 version: mmp_cmonkey_11_Oct_11

Members

MMP0317 Conserved hypothetical protein (NCBI)

Details for MMP0317 - Conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0317

Tuberculist Genomic Region

MMP0249 Ribosomal L37ae protein (NCBI)

Details for MMP0249 - Ribosomal L37ae protein (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0249

Tuberculist Genomic Region

MMP0370 hypothetical protein (NCBI)

Details for MMP0370 - hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0370

Tuberculist Genomic Region

MMP0250 conserved hypothetical protein (NCBI)

Details for MMP0250 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0250

Tuberculist Genomic Region

MMP0391 Aspartate aminotransferase (NCBI)

Details for MMP0391 - Aspartate aminotransferase (NCBI)

GO Terms: GO:0008152, GO:0008483, GO:0030170

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0391

Tuberculist Genomic Region

MMP0261 DNA directed RNA polymerase; subunit L (NCBI)

Details for MMP0261 - DNA directed RNA polymerase; subunit L (NCBI)

GO Terms: GO:0006350, GO:0003677, GO:0003902, GO:0003899, GO:0003900, GO:0046983, GO:0003901

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0261

Tuberculist Genomic Region

MMP0396 Enolase (NCBI)

Details for MMP0396 - Enolase (NCBI)

GO Terms: GO:0006096, GO:0000015, GO:0004634

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0396

Tuberculist Genomic Region

MMP0553 Ornithine carbamoyltransferase (NCBI)

Details for MMP0553 - Ornithine carbamoyltransferase (NCBI)

GO Terms: GO:0006520, GO:0009348, GO:0004585, GO:0016597

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0553

Tuberculist Genomic Region

MMP1013 Carbamoyl-phosphate synthase large chain (NCBI)

Details for MMP1013 - Carbamoyl-phosphate synthase large chain (NCBI)

GO Terms: GO:0019856, GO:0006526, GO:0005737, GO:0005524, GO:0004088

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1013

Tuberculist Genomic Region

MMP0654 Ketol-acid reductoisomerase (NCBI)

Details for MMP0654 - Ketol-acid reductoisomerase (NCBI)

GO Terms: GO:0009082, GO:0004455, GO:0050662

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0654

Tuberculist Genomic Region

MMP1035

Details for MMP1035 -

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1035

Tuberculist Genomic Region

MMP1149 3-isopropylmalate dehydratase (NCBI)

Details for MMP1149 - 3-isopropylmalate dehydratase (NCBI)

GO Terms: GO:0009098, GO:0051539, GO:0003861, GO:0047508

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1149

Tuberculist Genomic Region

MMP1036 Band 7 protein:Stomatin (NCBI)

Details for MMP1036 - Band 7 protein:Stomatin (NCBI)

GO Terms: GO:0016020

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1036

Tuberculist Genomic Region

MMP1310 IMP cyclohydrolase (NCBI)

Details for MMP1310 - IMP cyclohydrolase (NCBI)

GO Terms: GO:0006188, GO:0003937

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1310

Tuberculist Genomic Region

MMP1515 Chaperonin GroEL (thermosome, HSP60 family) (NCBI)

Details for MMP1515 - Chaperonin GroEL (thermosome, HSP60 family) (NCBI)

GO Terms: GO:0006457, GO:0005524, GO:0051082

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1515

Tuberculist Genomic Region

MMP1311 ferredoxin (NCBI)

Details for MMP1311 - ferredoxin (NCBI)

GO Terms: GO:0006118, GO:0009055, GO:0051536

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1311

Tuberculist Genomic Region

MMP1699 conserved hypothetical archaeal protein (NCBI)

Details for MMP1699 - conserved hypothetical archaeal protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1699

Tuberculist Genomic Region

MMP1497 conserved hypothetical protein (NCBI)

Details for MMP1497 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1497

Tuberculist Genomic Region

MMP0003 2-oxoglutarate oxidoreductase alpha subunit (NCBI)

Details for MMP0003 - 2-oxoglutarate oxidoreductase alpha subunit (NCBI)

GO Terms: GO:0006118, GO:0047553

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0003

Tuberculist Genomic Region

MMP1498 conserved hypothetical protein (NCBI)

Details for MMP1498 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1498

Tuberculist Genomic Region

MMP0006 Conserved hypothetical protein (NCBI)

Details for MMP0006 - Conserved hypothetical protein (NCBI)

GO Terms: GO:0008152, GO:0003824, GO:0003856

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0006

Tuberculist Genomic Region

MMP1510 Asp-tRNAAsn/Glu-tRNAGln amidotransferase subunit A (NCBI)

Details for MMP1510 - Asp-tRNAAsn/Glu-tRNAGln amidotransferase subunit A (NCBI)

GO Terms: GO:0006412, GO:0050567, GO:0050566, GO:0004040

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1510

Tuberculist Genomic Region

MMP0103 conserved hypothetical protein (NCBI)

Details for MMP0103 - conserved hypothetical protein (NCBI)

GO Terms: GO:0008152, GO:0009228, GO:0003824

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0103

Tuberculist Genomic Region

MMP1593 conserved hypothetical protein (NCBI)

Details for MMP1593 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1593

Tuberculist Genomic Region

MMP0127 H2-forming N5,N10-methylene-tetrahydromethanopterin dehydrogenease (NCBI)

Details for MMP0127 - H2-forming N5,N10-methylene-tetrahydromethanopterin dehydrogenease (NCBI)

GO Terms: GO:0019386, GO:0018537, GO:0047068

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0127

Tuberculist Genomic Region

MMP0062 Ribosomal protein L31e (NCBI)

Details for MMP0062 - Ribosomal protein L31e (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0062

Tuberculist Genomic Region

MMP0135 Threonine synthase (NCBI)

Details for MMP0135 - Threonine synthase (NCBI)

GO Terms: GO:0009088, GO:0004795, GO:0030170

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0135

Tuberculist Genomic Region

MMP1588 D-3-phosphoglycerate dehydrogenase (NCBI)

Details for MMP1588 - D-3-phosphoglycerate dehydrogenase (NCBI)

GO Terms: GO:0006564, GO:0016597, GO:0004617, GO:0051287

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1588

Tuberculist Genomic Region

MMP0136 3-isopropylmalate dehydratase small subunit (NCBI)

Details for MMP0136 - 3-isopropylmalate dehydratase small subunit (NCBI)

GO Terms: GO:0009098, GO:0009316, GO:0003861, GO:0047508

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0136

Tuberculist Genomic Region

Displaying 1 - 29 of 29

Motifs

Motif 1: e-value: 87 e-value: 69

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

MMP1447

Cro repressor family Helix-turn-helix motif containing protein (NCBI)
 down-regulates -0.40

MMP1447

MMP0052

Conserved Hypothetical protein with 2 CBS domains (NCBI)

MMP1304

Response regulator receiver (NCBI)
 down-regulates -0.39

MMP0052

MMP1304

MMP0499

conserved hypothetical protein (NCBI)
 down-regulates -0.20

MMP0499

MMP1015

Transcription factor CBF/NF-Y/archaeal histone:Histone-fold/TFIID-TAF/NF-Y domain (NCBI)
 down-regulates -0.14

MMP1015

GO Enrichment

Category: BP
Category GO ID GO Term Annotated Expected Significant p-value
BP GO:0022613 ribonucleoprotein complex biogenesis 3 0.05 1 0.0460
BP GO:0042254 ribosome biogenesis 3 0.05 1 0.0460
Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0016829 lyase activity 27 0.56 4 0.0016
MF GO:0016835 carbon-oxygen lyase activity 13 0.27 3 0.0018
MF GO:0003861 3-isopropylmalate dehydratase activity 4 0.08 2 0.0024
MF GO:0016836 hydro-lyase activity 11 0.23 2 0.0198

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