Methanococcus maripaludis S2 Module 83 Residual: 0.36

×

Error message

  • Unable to create CTools CSS cache directory. Check the permissions on your files directory.
  • Unable to create CTools CSS cache directory. Check the permissions on your files directory.

Summary

Residual: 0.36 Score: -11.739 version: mmp_cmonkey_11_Oct_11

Members

MMP0177 conserved hypothetical archaeal protein (NCBI)

Details for MMP0177 - conserved hypothetical archaeal protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0177

Tuberculist Genomic Region

MMP0422 conserved archael hypothetical protein (NCBI)

Details for MMP0422 - conserved archael hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0422

Tuberculist Genomic Region

MMP0283 Nucleoside-diphosphate kinase (NCBI)

Details for MMP0283 - Nucleoside-diphosphate kinase (NCBI)

GO Terms: GO:0006241, GO:0006183, GO:0006228, GO:0005524, GO:0004550

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0283

Tuberculist Genomic Region

MMP0692 conserved hypothetical protein (NCBI)

Details for MMP0692 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0692

Tuberculist Genomic Region

MMP0585 Universal stress protein (Usp) (NCBI)

Details for MMP0585 - Universal stress protein (Usp) (NCBI)

GO Terms: GO:0006950

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0585

Tuberculist Genomic Region

MMP0848 protein methionine-S-oxide reductase (NCBI)

Details for MMP0848 - protein methionine-S-oxide reductase (NCBI)

GO Terms: GO:0019538, GO:0008113

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0848

Tuberculist Genomic Region

MMP0940 related to ehbP of Methanothermobacter thermautotrophicus (NCBI)

Details for MMP0940 - related to ehbP of Methanothermobacter thermautotrophicus (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0940

Tuberculist Genomic Region

MMP0976 Protein of unknown function DUF166 (NCBI)

Details for MMP0976 - Protein of unknown function DUF166 (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0976

Tuberculist Genomic Region

MMP1118 conserved hypothetical protein (NCBI)

Details for MMP1118 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1118

Tuberculist Genomic Region

MMP1058 conserved hypothetical archeal protein (NCBI)

Details for MMP1058 - conserved hypothetical archeal protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1058

Tuberculist Genomic Region

MMP1250 6-pyruvoyl tetrahydropterin synthase (NCBI)

Details for MMP1250 - 6-pyruvoyl tetrahydropterin synthase (NCBI)

GO Terms: GO:0003874

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1250

Tuberculist Genomic Region

MMP1221 SAM (and some other nucleotide) binding motif (NCBI)

Details for MMP1221 - SAM (and some other nucleotide) binding motif (NCBI)

GO Terms: GO:0006464, GO:0009236, GO:0008610, GO:0004719, GO:0046025, GO:0008825, GO:0008276

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1221

Tuberculist Genomic Region

MMP1568 conserved hypothetical archaeal protein (NCBI)

Details for MMP1568 - conserved hypothetical archaeal protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1568

Tuberculist Genomic Region

MMP1227 Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase (NCBI)

Details for MMP1227 - Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase (NCBI)

GO Terms: GO:0009236, GO:0008276, GO:0046025

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1227

Tuberculist Genomic Region

MMP1569 conserved hypothetical archaeal protein (NCBI)

Details for MMP1569 - conserved hypothetical archaeal protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1569

Tuberculist Genomic Region

MMP1397 structural maintenance of chromosome protein (NCBI)

Details for MMP1397 - structural maintenance of chromosome protein (NCBI)

GO Terms: GO:0051276, GO:0006259, GO:0005694, GO:0005634, GO:0005524, GO:0005515, GO:0017111, GO:0003824

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1397

Tuberculist Genomic Region

MMP1720 conserved hypothetical archaeal protein (NCBI)

Details for MMP1720 - conserved hypothetical archaeal protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1720

Tuberculist Genomic Region

MMP1428 hypothetical protein (NCBI)

Details for MMP1428 - hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1428

Tuberculist Genomic Region

MMP1721 conserved hypothetical archaeal protein (NCBI)

Details for MMP1721 - conserved hypothetical archaeal protein (NCBI)

GO Terms: GO:0009236, GO:0000166, GO:0042242

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1721

Tuberculist Genomic Region

MMP1551 signal recognition particle protein SRP54 (NCBI)

Details for MMP1551 - signal recognition particle protein SRP54 (NCBI)

GO Terms: GO:0006614, GO:0048500, GO:0016020, GO:0008312, GO:0017111, GO:0005525

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1551

Tuberculist Genomic Region

MMP0129 Conserved Hypothetical Protein (NCBI)

Details for MMP0129 - Conserved Hypothetical Protein (NCBI)

GO Terms: GO:0006260, GO:0003677, GO:0003887

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0129

Tuberculist Genomic Region

MMP1607 Protein of unknown function DUF99 (NCBI)

Details for MMP1607 - Protein of unknown function DUF99 (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1607

Tuberculist Genomic Region

MMP0421 conserved hypothetical protein (NCBI)

Details for MMP0421 - conserved hypothetical protein (NCBI)

GO Terms: GO:0015948, GO:0003824

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0421

Tuberculist Genomic Region

MMP0660 Adenine phosphoribosyltransferase (NCBI)

Details for MMP0660 - Adenine phosphoribosyltransferase (NCBI)

GO Terms: GO:0009116, GO:0006168, GO:0003999

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0660

Tuberculist Genomic Region

Displaying 1 - 24 of 24

Motifs

Motif 1: e-value: 6.9 e-value: 190

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

MMP1023

Transcriptional regulator, TetR Family Member (NCBI)

MMP1303

Sensory transduction histidine kinase (NCBI)
 down-regulates -0.43

MMP1023

MMP1303

MMP0460

Conserved Hypothetical Protein (NCBI)
 up-regulates 0.36

MMP0460

MMP0907

predicted archaeal transcriptional regulator (NCBI)

MMP1646

conserved hypothetical archaeal protein (NCBI)
 down-regulates -0.22

MMP0907

MMP1646

GO Enrichment

Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0097159 organic cyclic compound binding 329 1.70 4 0.0320
MF GO:1901363 heterocyclic compound binding 329 1.70 4 0.0320

Comments

Log in to post comments