Desulfovibrio vulgaris Hildenborough Module 10 Residual: 0.48

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Summary

Residual: 0.48 Score: -36.0095 version: dvh_cmonkey_11_Mar_02

Members

DVU0161 Amidophosphoribosyltransferase

Details for DVU0161 - Amidophosphoribosyltransferase

GO Terms: GO:0006189, GO:0004044, GO:0051536, GO:0046872, GO:0009116, GO:0009113

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0161

Tuberculist Genomic Region

DVU1298 30S ribosomal protein S12

Details for DVU1298 - 30S ribosomal protein S12

GO Terms: GO:0019843, GO:0015935, GO:0003735, GO:0000049, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1298

Tuberculist Genomic Region

DVU0162 Carbamoyl-phosphate synthase

Details for DVU0162 - Carbamoyl-phosphate synthase

GO Terms: GO:0044205, GO:0005524, GO:0006526, GO:0004088, GO:0046872

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0162

Tuberculist Genomic Region

DVU1299 30S ribosomal protein S7

Details for DVU1299 - 30S ribosomal protein S7

GO Terms: GO:0019843, GO:0015935, GO:0003735, GO:0000049, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1299

Tuberculist Genomic Region

DVU0399 Uncharacterized protein

Details for DVU0399 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0399

Tuberculist Genomic Region

DVU1300 Elongation factor G

Details for DVU1300 - Elongation factor G

GO Terms: GO:0005525, GO:0003924, GO:0005737, GO:0003746

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1300

Tuberculist Genomic Region

DVU0503 Polyribonucleotide nucleotidyltransferase

Details for DVU0503 - Polyribonucleotide nucleotidyltransferase

GO Terms: GO:0000175, GO:0003723, GO:0006396, GO:0005737, GO:0006402, GO:0000287, GO:0004654

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0503

Tuberculist Genomic Region

DVU1575 Ribose-phosphate pyrophosphokinase

Details for DVU1575 - Ribose-phosphate pyrophosphokinase

GO Terms: GO:0005524, GO:0005737, GO:0016301, GO:0000287, GO:0009165, GO:0009156, GO:0004749

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1575

Tuberculist Genomic Region

DVU0507 Uncharacterized protein

Details for DVU0507 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0507

Tuberculist Genomic Region

DVU1622 Phosphoribosylformylglycinamidine synthase I

Details for DVU1622 - Phosphoribosylformylglycinamidine synthase I

GO Terms: GO:0006189, GO:0005737, GO:0004642

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1622

Tuberculist Genomic Region

DVU0508 Translation initiation factor IF-2

Details for DVU0508 - Translation initiation factor IF-2

GO Terms: GO:0005525, GO:0003924, GO:0005737, GO:0003743

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0508

Tuberculist Genomic Region

DVU2231 GTP-binding protein TypA

Details for DVU2231 - GTP-binding protein TypA

GO Terms: GO:0005525, GO:0003924

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2231

Tuberculist Genomic Region

DVU0510 Transcription termination/antitermination protein NusA

Details for DVU0510 - Transcription termination/antitermination protein NusA

GO Terms: GO:0003723, GO:0031554, GO:0003700

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0510

Tuberculist Genomic Region

DVU2913 Lipoprotein, putative

Details for DVU2913 - Lipoprotein, putative

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2913

Tuberculist Genomic Region

DVU0511 Ribosome maturation factor RimP

Details for DVU0511 - Ribosome maturation factor RimP

GO Terms: GO:0005737, GO:0042274

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0511

Tuberculist Genomic Region

DVU2914 Peptide chain release factor 1

Details for DVU2914 - Peptide chain release factor 1

GO Terms: GO:0005737, GO:0016149

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2914

Tuberculist Genomic Region

DVU0957 30S ribosomal protein S18

Details for DVU0957 - 30S ribosomal protein S18

GO Terms: GO:0019843, GO:0005840, GO:0003735, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0957

Tuberculist Genomic Region

DVU2923 Transcription termination/antitermination protein NusG

Details for DVU2923 - Transcription termination/antitermination protein NusG

GO Terms: GO:0006354, GO:0006353, GO:0032784, GO:0031564

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2923

Tuberculist Genomic Region

DVU1077 Membrane protein insertase YidC

Details for DVU1077 - Membrane protein insertase YidC

GO Terms: GO:0016021, GO:0005886, GO:0051205, GO:0015031

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1077

Tuberculist Genomic Region

DVU3308 UPF0173 metal-dependent hydrolase DVU_3308

Details for DVU3308 - UPF0173 metal-dependent hydrolase DVU_3308

GO Terms: GO:0016787

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3308

Tuberculist Genomic Region

DVU1078 R3H domain protein

Details for DVU1078 - R3H domain protein

GO Terms: GO:0003676

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1078

Tuberculist Genomic Region

DVU3310 ATP-dependent RNA helicase, DEAD/DEAH family

Details for DVU3310 - ATP-dependent RNA helicase, DEAD/DEAH family

GO Terms: GO:0005524, GO:0004386, GO:0003676

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3310

Tuberculist Genomic Region

DVU1202 Cytidine/deoxycytidylate deaminase family protein

Details for DVU1202 - Cytidine/deoxycytidylate deaminase family protein

GO Terms: GO:0004132, GO:0006220, GO:0008270

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1202

Tuberculist Genomic Region

DVU3368 Histidine--tRNA ligase

Details for DVU3368 - Histidine--tRNA ligase

GO Terms: GO:0005524, GO:0005737, GO:0004821, GO:0006427

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3368

Tuberculist Genomic Region

DVU1207 3-oxoacyl-[acyl-carrier-protein] synthase 3

Details for DVU1207 - 3-oxoacyl-[acyl-carrier-protein] synthase 3

GO Terms: GO:0004315, GO:0033818, GO:0005737, GO:0006633

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1207

Tuberculist Genomic Region

Displaying 1 - 25 of 25

Motifs

Motif 1: e-value: 3.1 e-value: 1500

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

DVU0063

Transcriptional regulator, MarR family
 up-regulates 0.46

DVU0063

DVU0118

Sigma-54 dependent transcriptional regulator/response regulator
 down-regulates -0.19

DVU0118

DVU1547

Sensory box protein
 down-regulates -0.28

DVU1547

DVU2111

Transcriptional regulator, LysR family
 up-regulates 0.30

DVU2111

DVU2547

Transcriptional regulator, putative
 down-regulates -0.29

DVU2547

GO Enrichment

Category: BP
Category GO ID GO Term Annotated Expected Significant p-value
BP GO:0034654 nucleobase-containing compound biosynthe... 41 0.44 4 0.0001
BP GO:0044271 cellular nitrogen compound biosynthetic ... 60 0.65 4 0.0006
BP GO:0019438 aromatic compound biosynthetic process 61 0.66 4 0.0007
BP GO:0009156 ribonucleoside monophosphate biosyntheti... 23 0.25 3 0.0008
BP GO:0009124 nucleoside monophosphate biosynthetic pr... 24 0.26 3 0.0009
BP GO:0009161 ribonucleoside monophosphate metabolic p... 24 0.26 3 0.0009
BP GO:0018130 heterocycle biosynthetic process 67 0.73 4 0.0010
BP GO:0009123 nucleoside monophosphate metabolic proce... 25 0.27 3 0.0011
BP GO:0009260 ribonucleotide biosynthetic process 25 0.27 3 0.0011
BP GO:0046390 ribose phosphate biosynthetic process 25 0.27 3 0.0011
BP GO:0009259 ribonucleotide metabolic process 26 0.28 3 0.0012
BP GO:0019693 ribose phosphate metabolic process 26 0.28 3 0.0012
BP GO:1901362 organic cyclic compound biosynthetic pro... 70 0.76 4 0.0012
BP GO:0006139 nucleobase-containing compound metabolic... 73 0.79 4 0.0014
BP GO:0009165 nucleotide biosynthetic process 32 0.35 3 0.0023
BP GO:1901293 nucleoside phosphate biosynthetic proces... 32 0.35 3 0.0023
BP GO:0006753 nucleoside phosphate metabolic process 35 0.38 3 0.0030
BP GO:0009117 nucleotide metabolic process 35 0.38 3 0.0030
BP GO:0034641 cellular nitrogen compound metabolic pro... 92 1.00 4 0.0037
BP GO:0006725 cellular aromatic compound metabolic pro... 94 1.02 4 0.0040
BP GO:1901137 carbohydrate derivative biosynthetic pro... 40 0.43 3 0.0044
BP GO:0006188 IMP biosynthetic process 11 0.12 2 0.0047
BP GO:0006189 'de novo' IMP biosynthetic process 11 0.12 2 0.0047
BP GO:0046040 IMP metabolic process 11 0.12 2 0.0047
BP GO:0044249 cellular biosynthetic process 98 1.06 4 0.0048
BP GO:0046483 heterocycle metabolic process 98 1.06 4 0.0048
BP GO:0055086 nucleobase-containing small molecule met... 42 0.46 3 0.0051
BP GO:1901360 organic cyclic compound metabolic proces... 101 1.09 4 0.0054
BP GO:1901576 organic substance biosynthetic process 102 1.11 4 0.0056
BP GO:0090407 organophosphate biosynthetic process 46 0.50 3 0.0067
BP GO:1901135 carbohydrate derivative metabolic proces... 49 0.53 3 0.0080
BP GO:0006796 phosphate-containing compound metabolic ... 50 0.54 3 0.0085
BP GO:0019637 organophosphate metabolic process 50 0.54 3 0.0085
BP GO:0006793 phosphorus metabolic process 51 0.55 3 0.0090
BP GO:0006164 purine nucleotide biosynthetic process 17 0.18 2 0.0114
BP GO:0009127 purine nucleoside monophosphate biosynth... 17 0.18 2 0.0114
BP GO:0009152 purine ribonucleotide biosynthetic proce... 17 0.18 2 0.0114
BP GO:0009168 purine ribonucleoside monophosphate bios... 17 0.18 2 0.0114
BP GO:0072522 purine-containing compound biosynthetic ... 17 0.18 2 0.0114
BP GO:0006163 purine nucleotide metabolic process 18 0.20 2 0.0128
BP GO:0009126 purine nucleoside monophosphate metaboli... 18 0.20 2 0.0128
BP GO:0009150 purine ribonucleotide metabolic process 18 0.20 2 0.0128
BP GO:0009167 purine ribonucleoside monophosphate meta... 18 0.20 2 0.0128
BP GO:0006807 nitrogen compound metabolic process 127 1.38 4 0.0136
BP GO:0009058 biosynthetic process 133 1.44 4 0.0164
BP GO:0072521 purine-containing compound metabolic pro... 21 0.23 2 0.0173
BP GO:1901566 organonitrogen compound biosynthetic pro... 68 0.74 3 0.0209
BP GO:0044238 primary metabolic process 154 1.67 4 0.0297
BP GO:0044711 single-organism biosynthetic process 82 0.89 3 0.0357
BP GO:0044237 cellular metabolic process 163 1.77 4 0.0373
BP GO:1901564 organonitrogen compound metabolic proces... 86 0.93 3 0.0409
BP GO:0044281 small molecule metabolic process 88 0.95 3 0.0436
Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0005525 GTP binding 24 0.28 3 0.0023
MF GO:0003723 RNA binding 54 0.63 4 0.0027
MF GO:0019843 rRNA binding 27 0.32 3 0.0032
MF GO:0019001 guanyl nucleotide binding 29 0.34 3 0.0040
MF GO:0032561 guanyl ribonucleotide binding 29 0.34 3 0.0040
MF GO:0016814 hydrolase activity, acting on carbon-nit... 3 0.04 1 0.0347
MF GO:0097159 organic cyclic compound binding 611 7.15 11 0.0400
MF GO:1901363 heterocyclic compound binding 611 7.15 11 0.0400
MF GO:0004312 fatty acid synthase activity 4 0.05 1 0.0461
MF GO:0008408 3'-5' exonuclease activity 4 0.05 1 0.0461
MF GO:0019239 deaminase activity 4 0.05 1 0.0461

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