Desulfovibrio vulgaris Hildenborough Module 14 Residual: 0.50

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Summary

Residual: 0.50 Score: -31.7444 version: dvh_cmonkey_11_Mar_02

Members

DVU0072 Glucose-1-phosphate cytidylyl-transferase

Details for DVU0072 - Glucose-1-phosphate cytidylyl-transferase

GO Terms: GO:0009058, GO:0047343

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0072

Tuberculist Genomic Region

DVU1064 Aconitate hydratase, putative

Details for DVU1064 - Aconitate hydratase, putative

GO Terms: GO:0016829

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1064

Tuberculist Genomic Region

DVU0076 Glycosyl transferase, group 2 family protein

Details for DVU0076 - Glycosyl transferase, group 2 family protein

GO Terms: GO:0016740

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0076

Tuberculist Genomic Region

DVU1423 2-oxoglutarate dehydrogenase, E3 component, lipoamide dehydrogenase

Details for DVU1423 - 2-oxoglutarate dehydrogenase, E3 component, lipoamide dehydrogenase

GO Terms: GO:0050661, GO:0045454, GO:0050787, GO:0004148, GO:0050660, GO:0016152, GO:0045340

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1423

Tuberculist Genomic Region

DVU0080 Fumarate hydratase class II

Details for DVU0080 - Fumarate hydratase class II

GO Terms: GO:0004333, GO:0006106, GO:0006099, GO:0045239

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0080

Tuberculist Genomic Region

DVU1425 Probable glycine dehydrogenase

Details for DVU1425 - Probable glycine dehydrogenase

GO Terms: GO:0019464, GO:0004375, GO:0009116, GO:0030170

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1425

Tuberculist Genomic Region

DVU0328 Glycosyl transferase, group 1 family protein

Details for DVU0328 - Glycosyl transferase, group 1 family protein

GO Terms: GO:0009058, GO:0016740

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0328

Tuberculist Genomic Region

DVU1452 D-aminoacyl-tRNA deacylase

Details for DVU1452 - D-aminoacyl-tRNA deacylase

GO Terms: GO:0019478, GO:0005737, GO:0016788

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1452

Tuberculist Genomic Region

DVU0425 Uncharacterized protein

Details for DVU0425 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0425

Tuberculist Genomic Region

DVU1607 Uncharacterized protein

Details for DVU1607 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1607

Tuberculist Genomic Region

DVU0428 Uncharacterized protein

Details for DVU0428 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0428

Tuberculist Genomic Region

DVU1926 Uncharacterized protein

Details for DVU1926 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1926

Tuberculist Genomic Region

DVU0439 YCII-related domain protein

Details for DVU0439 - YCII-related domain protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0439

Tuberculist Genomic Region

DVU2568 Peptidase, M20/M25/M40 family

Details for DVU2568 - Peptidase, M20/M25/M40 family

GO Terms: GO:0016787

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2568

Tuberculist Genomic Region

DVU0441 Adenine deaminase

Details for DVU0441 - Adenine deaminase

GO Terms: GO:0006146, GO:0000034

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0441

Tuberculist Genomic Region

DVU2583 Lipoprotein, putative

Details for DVU2583 - Lipoprotein, putative

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2583

Tuberculist Genomic Region

DVU0478 Ser/Thr protein phosphatase family

Details for DVU0478 - Ser/Thr protein phosphatase family

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0478

Tuberculist Genomic Region

DVU2627 Conserved domain protein

Details for DVU2627 - Conserved domain protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2627

Tuberculist Genomic Region

DVU0638 Membrane protein, putative

Details for DVU0638 - Membrane protein, putative

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0638

Tuberculist Genomic Region

DVU2673 Anaerobic glycerol-3-phosphate dehydrogenase, subunit A, truncation

Details for DVU2673 - Anaerobic glycerol-3-phosphate dehydrogenase, subunit A, truncation

GO Terms: GO:0004368, GO:0009331, GO:0006072

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2673

Tuberculist Genomic Region

DVU0680 Histidine kinase

Details for DVU0680 - Histidine kinase

GO Terms: GO:0005524, GO:0016020, GO:0000155

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0680

Tuberculist Genomic Region

DVU2779 Extracellular solute-binding protein, putative

Details for DVU2779 - Extracellular solute-binding protein, putative

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2779

Tuberculist Genomic Region

DVU0691 Membrane protein, putative

Details for DVU0691 - Membrane protein, putative

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0691

Tuberculist Genomic Region

DVU3113 Carbamoyl-phosphate synthase small chain

Details for DVU3113 - Carbamoyl-phosphate synthase small chain

GO Terms: GO:0044205, GO:0005524, GO:0006526, GO:0070409, GO:0004088, GO:0006543

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3113

Tuberculist Genomic Region

DVU0743 Histidine kinase

Details for DVU0743 - Histidine kinase

GO Terms: GO:0005524, GO:0016020, GO:0000155, GO:0006355

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0743

Tuberculist Genomic Region

DVU3127 Paraquat-inducible protein B

Details for DVU3127 - Paraquat-inducible protein B

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3127

Tuberculist Genomic Region

DVU1004 Membrane protein, putative

Details for DVU1004 - Membrane protein, putative

GO Terms: GO:0016021

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1004

Tuberculist Genomic Region

DVU3296 Membrane protein, putative

Details for DVU3296 - Membrane protein, putative

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3296

Tuberculist Genomic Region

DVU1051 Cytochrome c-type biogenesis protein CcmE

Details for DVU1051 - Cytochrome c-type biogenesis protein CcmE

GO Terms: GO:0017004, GO:0016021, GO:0046872, GO:0005886, GO:0017003

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1051

Tuberculist Genomic Region

Displaying 1 - 29 of 29

Motifs

Motif 1: e-value: 150 e-value: 1300

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

DVU0854

NirD protein, putative
 up-regulates 0.15

DVU0854

DVU1083

Phosphate regulon transcriptional regulator PhoB
 down-regulates -0.11

DVU1083

GO Enrichment

Category: BP
Category GO ID GO Term Annotated Expected Significant p-value
BP GO:1901565 organonitrogen compound catabolic proces... 7 0.13 3 0.0001
BP GO:0044712 single-organism catabolic process 8 0.15 3 0.0002
BP GO:0044248 cellular catabolic process 10 0.19 3 0.0005
BP GO:0009056 catabolic process 12 0.23 3 0.0009
BP GO:1901575 organic substance catabolic process 12 0.23 3 0.0009
BP GO:0009063 cellular amino acid catabolic process 6 0.11 2 0.0045
BP GO:0016054 organic acid catabolic process 6 0.11 2 0.0045
BP GO:0044282 small molecule catabolic process 6 0.11 2 0.0045
BP GO:0046395 carboxylic acid catabolic process 6 0.11 2 0.0045
BP GO:1901606 alpha-amino acid catabolic process 6 0.11 2 0.0045
Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0016829 lyase activity 33 0.21 2 0.0164
MF GO:0050661 NADP binding 5 0.03 1 0.0309

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