Desulfovibrio vulgaris Hildenborough Module 45 Residual: 0.36

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Summary

Residual: 0.36 Score: -90.0629 version: dvh_cmonkey_11_Mar_02

Members

DVU1303 50S ribosomal protein L3

Details for DVU1303 - 50S ribosomal protein L3

GO Terms: GO:0019843, GO:0005840, GO:0003735, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1303

Tuberculist Genomic Region

DVU1330 50S ribosomal protein L17

Details for DVU1330 - 50S ribosomal protein L17

GO Terms: GO:0005840, GO:0003735, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1330

Tuberculist Genomic Region

DVU1325 50S ribosomal protein L36

Details for DVU1325 - 50S ribosomal protein L36

GO Terms: GO:0005840, GO:0003735, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1325

Tuberculist Genomic Region

DVU1574 50S ribosomal protein L25

Details for DVU1574 - 50S ribosomal protein L25

GO Terms: GO:0008097, GO:0005840, GO:0003735, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1574

Tuberculist Genomic Region

DVU1326 30S ribosomal protein S13

Details for DVU1326 - 30S ribosomal protein S13

GO Terms: GO:0019843, GO:0005840, GO:0003735, GO:0000049, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1326

Tuberculist Genomic Region

DVU2518 50S ribosomal protein L13

Details for DVU2518 - 50S ribosomal protein L13

GO Terms: GO:0005840, GO:0003735, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2518

Tuberculist Genomic Region

DVU1327 30S ribosomal protein S11

Details for DVU1327 - 30S ribosomal protein S11

GO Terms: GO:0019843, GO:0005840, GO:0003735, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1327

Tuberculist Genomic Region

DVU2924 50S ribosomal protein L11

Details for DVU2924 - 50S ribosomal protein L11

GO Terms: GO:0070180, GO:0005840, GO:0003735, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2924

Tuberculist Genomic Region

DVU1328 30S ribosomal protein S4

Details for DVU1328 - 30S ribosomal protein S4

GO Terms: GO:0019843, GO:0015935, GO:0003735, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1328

Tuberculist Genomic Region

DVU2926 50S ribosomal protein L10

Details for DVU2926 - 50S ribosomal protein L10

GO Terms: GO:0070180, GO:0005840, GO:0042254, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2926

Tuberculist Genomic Region

DVU1329 DNA-directed RNA polymerase subunit alpha

Details for DVU1329 - DNA-directed RNA polymerase subunit alpha

GO Terms: GO:0003677, GO:0003899, GO:0006351

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1329

Tuberculist Genomic Region

DVU1575 Ribose-phosphate pyrophosphokinase

Details for DVU1575 - Ribose-phosphate pyrophosphokinase

GO Terms: GO:0005524, GO:0005737, GO:0016301, GO:0000287, GO:0009165, GO:0009156, GO:0004749

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1575

Tuberculist Genomic Region

Displaying 1 - 12 of 12

Motifs

Motif 1: e-value: 93 e-value: 2300

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

DVU1547

Sensory box protein
 down-regulates -0.43

DVU1547

DVU2547

Transcriptional regulator, putative
 down-regulates -0.55

DVU2547

GO Enrichment

Category: CC
Category GO ID GO Term Annotated Expected Significant p-value
CC GO:0005840 ribosome 23 0.18 3 0.0002
CC GO:0030529 ribonucleoprotein complex 23 0.18 3 0.0002
CC GO:0043229 intracellular organelle 23 0.18 3 0.0002
CC GO:0043232 intracellular non-membrane-bounded organ... 23 0.18 3 0.0002
CC GO:0044444 cytoplasmic part 27 0.21 3 0.0003
CC GO:0032991 macromolecular complex 33 0.25 3 0.0005
CC GO:0043226 organelle 48 0.37 3 0.0017
CC GO:0043228 non-membrane-bounded organelle 48 0.37 3 0.0017
CC GO:0005737 cytoplasm 86 0.66 3 0.0102
CC GO:0005622 intracellular 104 0.79 3 0.0181
CC GO:0044424 intracellular part 104 0.79 3 0.0181
CC GO:0005623 cell 145 1.11 3 0.0496
CC GO:0044464 cell part 145 1.11 3 0.0496
Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0097159 organic cyclic compound binding 611 4.29 9 0.0012
MF GO:1901363 heterocyclic compound binding 611 4.29 9 0.0012
MF GO:0005488 binding 789 5.54 9 0.0125

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