Desulfovibrio vulgaris Hildenborough Module 121 Residual: 0.50

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Summary

Residual: 0.50 Score: -33.0522 version: dvh_cmonkey_11_Mar_02

Members

DVU0408 Response regulator/sensory box/GGDEF domain/EAL domain protein

Details for DVU0408 - Response regulator/sensory box/GGDEF domain/EAL domain protein

GO Terms: GO:0000155

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0408

Tuberculist Genomic Region

DVU3138 Uncharacterized protein

Details for DVU3138 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3138

Tuberculist Genomic Region

DVU1171 Uncharacterized protein

Details for DVU1171 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1171

Tuberculist Genomic Region

DVU3218 Pyrazinamidase/nicotinamidase

Details for DVU3218 - Pyrazinamidase/nicotinamidase

GO Terms: GO:0003824

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3218

Tuberculist Genomic Region

DVU1367 Sec-independent protein translocase protein TatA

Details for DVU1367 - Sec-independent protein translocase protein TatA

GO Terms: GO:0033281, GO:0005887, GO:0009306, GO:0008320, GO:0043953

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1367

Tuberculist Genomic Region

DVUA0018 Uncharacterized protein

Details for DVUA0018 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVUA0018

Tuberculist Genomic Region

DVU1387 Uncharacterized protein

Details for DVU1387 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1387

Tuberculist Genomic Region

DVUA0067 Membrane protein, putative

Details for DVUA0067 - Membrane protein, putative

GO Terms: GO:0016020, GO:0016747

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVUA0067

Tuberculist Genomic Region

DVU1739 Uncharacterized protein

Details for DVU1739 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1739

Tuberculist Genomic Region

DVUA0135 CRISPR-associated endoribonuclease Cas2

Details for DVUA0135 - CRISPR-associated endoribonuclease Cas2

GO Terms: GO:0051607, GO:0004519, GO:0043571, GO:0046872

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVUA0135

Tuberculist Genomic Region

DVU1750 Uncharacterized protein

Details for DVU1750 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1750

Tuberculist Genomic Region

DVU0196 Uncharacterized protein

Details for DVU0196 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0196

Tuberculist Genomic Region

DVU1995 Anti-sigma factor antagonist

Details for DVU1995 - Anti-sigma factor antagonist

GO Terms: GO:0006355

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1995

Tuberculist Genomic Region

DVU0563 ISD1, transposase OrfB

Details for DVU0563 - ISD1, transposase OrfB

GO Terms: GO:0015074, GO:0003676

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0563

Tuberculist Genomic Region

DVU2017 ISDvu5, transposase

Details for DVU2017 - ISDvu5, transposase

GO Terms: GO:0003677, GO:0004803, GO:0006313

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2017

Tuberculist Genomic Region

DVU0802 Uncharacterized protein

Details for DVU0802 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0802

Tuberculist Genomic Region

DVU2068 HD domain protein

Details for DVU2068 - HD domain protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2068

Tuberculist Genomic Region

DVU0993 Uncharacterized protein

Details for DVU0993 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0993

Tuberculist Genomic Region

DVU2178 ISDvu2, transposase OrfB

Details for DVU2178 - ISDvu2, transposase OrfB

GO Terms: GO:0015074, GO:0003676

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2178

Tuberculist Genomic Region

DVU1773 Uncharacterized protein

Details for DVU1773 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1773

Tuberculist Genomic Region

DVU2263 Outer membrane autotransporter barrel domain protein

Details for DVU2263 - Outer membrane autotransporter barrel domain protein

GO Terms: GO:0019867

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2263

Tuberculist Genomic Region

DVU2671 Ribonuclease Y

Details for DVU2671 - Ribonuclease Y

GO Terms: GO:0003723, GO:0004521, GO:0016021, GO:0006402, GO:0005886

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2671

Tuberculist Genomic Region

DVU2682 DedA family protein

Details for DVU2682 - DedA family protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2682

Tuberculist Genomic Region

DVU3038 Uncharacterized protein

Details for DVU3038 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3038

Tuberculist Genomic Region

DVU2842 Cytosine-specific methyltransferase

Details for DVU2842 - Cytosine-specific methyltransferase

GO Terms: GO:0003886, GO:0003677, GO:0009307

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2842

Tuberculist Genomic Region

DVUA0071 Glycosyl transferase, group 1/2 family protein

Details for DVUA0071 - Glycosyl transferase, group 1/2 family protein

GO Terms: GO:0009058, GO:0016740

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVUA0071

Tuberculist Genomic Region

Displaying 1 - 26 of 26

Motifs

Motif 1: e-value: 17 e-value: 2200

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

DVU0653

Sigma-54 dependent transcriptional regulator, putative/response regulator
 up-regulates 0.14

DVU0653

DVU2114

Sigma-54 dependent transcriptional regulator/response regulator
 up-regulates 0.19

DVU2114

DVU3220

Sigma-54 dependent transcriptional regulator/response regulator
 down-regulates -0.11

DVU3220

DVUA0143

Nif-specific regulatory protein
 down-regulates -0.14

DVUA0143

GO Enrichment

Category: BP
Category GO ID GO Term Annotated Expected Significant p-value
BP GO:0015074 DNA integration 3 0.03 1 0.0320
BP GO:0090304 nucleic acid metabolic process 32 0.35 2 0.0390
Category: CC
Category GO ID GO Term Annotated Expected Significant p-value
CC GO:0033281 TAT protein transport complex 4 0.03 1 0.0300
Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0003886 DNA (cytosine-5-)-methyltransferase acti... 3 0.01 1 0.0120
MF GO:0009008 DNA-methyltransferase activity 3 0.01 1 0.0120
MF GO:0008757 S-adenosylmethionine-dependent methyltra... 9 0.04 1 0.0350
MF GO:0000155 phosphorelay sensor kinase activity 12 0.05 1 0.0460
MF GO:0004672 protein kinase activity 12 0.05 1 0.0460
MF GO:0004673 protein histidine kinase activity 12 0.05 1 0.0460
MF GO:0004872 receptor activity 12 0.05 1 0.0460
MF GO:0016775 phosphotransferase activity, nitrogenous... 12 0.05 1 0.0460
MF GO:0038023 signaling receptor activity 12 0.05 1 0.0460

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