Desulfovibrio vulgaris Hildenborough Module 132 Residual: 0.48 | Syntrophy Portal

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Summary

Residual: 0.48 Score: -32.7094 version: dvh_cmonkey_11_Mar_02

Members

DVU0006 Universal stress protein family Details for DVU0006 - Universal stress protein family GO Terms: GO:0006950 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0006 Tuberculist Genomic Region	DVU1904 Chemotaxis protein CheW Details for DVU1904 - Chemotaxis protein CheW GO Terms: GO:0006935, GO:0005622, GO:0004871 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1904 Tuberculist Genomic Region
DVU0138 Response regulator Details for DVU0138 - Response regulator GO Terms: GO:0000160 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0138 Tuberculist Genomic Region	DVU2076 Chemotaxis protein methyltransferase Details for DVU2076 - Chemotaxis protein methyltransferase GO Terms: GO:0008983 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2076 Tuberculist Genomic Region
DVU0238 Uncharacterized protein Details for DVU0238 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0238 Tuberculist Genomic Region	DVU2351 Uncharacterized protein Details for DVU2351 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2351 Tuberculist Genomic Region
DVU0305 Ferredoxin II Details for DVU0305 - Ferredoxin II GO Terms: GO:0009055, GO:0005506, GO:0051536 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0305 Tuberculist Genomic Region	DVU2625 Uncharacterized protein Details for DVU2625 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2625 Tuberculist Genomic Region
DVU0629 Transcriptional regulator, TetR family Details for DVU0629 - Transcriptional regulator, TetR family GO Terms: GO:0003677, GO:0006355, GO:0006351 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0629 Tuberculist Genomic Region	DVU2973 Integration host factor, beta subunit Details for DVU2973 - Integration host factor, beta subunit GO Terms: GO:0003677 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2973 Tuberculist Genomic Region
DVU0986 Uncharacterized protein Details for DVU0986 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0986 Tuberculist Genomic Region	DVU0042 RNA methyltransferase, TrmH family, group 3 Details for DVU0042 - RNA methyltransferase, TrmH family, group 3 GO Terms: GO:0003723, GO:0008173, GO:0006396 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0042 Tuberculist Genomic Region
DVU0987 Heavy metal-binding domain protein Details for DVU0987 - Heavy metal-binding domain protein GO Terms: GO:0046872, GO:0030001 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0987 Tuberculist Genomic Region	DVU0754 Uncharacterized protein Details for DVU0754 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0754 Tuberculist Genomic Region
DVU1093 HAD-superfamily hydrolase, subfamily IA, variant 3 Details for DVU1093 - HAD-superfamily hydrolase, subfamily IA, variant 3 GO Terms: GO:0016787 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1093 Tuberculist Genomic Region	DVU0938 Isoamylase N-terminal domain protein Details for DVU0938 - Isoamylase N-terminal domain protein GO Terms: GO:0005975, GO:0004553 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0938 Tuberculist Genomic Region
DVU1470 Peptidylprolyl isomerase Details for DVU1470 - Peptidylprolyl isomerase GO Terms: GO:0003755 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1470 Tuberculist Genomic Region	DVU0974 Uncharacterized protein Details for DVU0974 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0974 Tuberculist Genomic Region
DVU1568 Ferritin Details for DVU1568 - Ferritin GO Terms: GO:0006879, GO:0005737, GO:0008199, GO:0006826 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1568 Tuberculist Genomic Region	DVU1180 Uncharacterized protein Details for DVU1180 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1180 Tuberculist Genomic Region
DVU1817 Cytochrome c-553 Details for DVU1817 - Cytochrome c-553 GO Terms: GO:0009055, GO:0020037, GO:0046872, GO:0055114, GO:0042597 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1817 Tuberculist Genomic Region	DVU2202 Peptidoglycan lytic exotransglycosylase Details for DVU2202 - Peptidoglycan lytic exotransglycosylase GO Terms: GO:0016837, GO:0009279, GO:0071555 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2202 Tuberculist Genomic Region
DVU1894 Uncharacterized protein Details for DVU1894 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1894 Tuberculist Genomic Region	DVU2212 Uncharacterized protein Details for DVU2212 - Uncharacterized protein GO Terms: GO:0006777 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2212 Tuberculist Genomic Region

Motifs

Motif 1:

e-value: 3900 Motif 2:

e-value: 5800

Module Median Expression Profiles

Module Plots

Regulation

Regulator	Interaction	Influence Weight	Other Influences
DVU1949 Nif-specific regulatory protein	down-regulates	-0.15	DVU1949
DVU2802 Transcriptional regulator, GntR family	up-regulates	0.17	DVU2802
DVU2836 Uncharacterized protein	up-regulates	0.16	DVU2836
DVU2989 Psp operon transcriptional activator	down-regulates	-0.13	DVU2989
DVU3084 Transcriptional regulator, putative	up-regulates	0.15	DVU3084

GO Enrichment

Category: MF
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
MF	GO:0009055	electron carrier activity	16	0.12	2	0.0062
MF	GO:0008276	protein methyltransferase activity	3	0.02	1	0.0233
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase acti...	6	0.05	1	0.0460
MF	GO:0016859	cis-trans isomerase activity	6	0.05	1	0.0460

Essentiality

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