Desulfovibrio vulgaris Hildenborough Module 163 Residual: 0.40 | Syntrophy Portal

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Summary

Residual: 0.40 Score: -54.7572 version: dvh_cmonkey_11_Mar_02

Members

DVU0506 DHH family protein Details for DVU0506 - DHH family protein GO Terms: GO:0003676 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0506 Tuberculist Genomic Region	DVUA0006 Magnesium transporter MgtE, putative Details for DVUA0006 - Magnesium transporter MgtE, putative GO Terms: GO:0003824, GO:0008324 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVUA0006 Tuberculist Genomic Region
DVU1246 Membrane protein, putative Details for DVU1246 - Membrane protein, putative GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1246 Tuberculist Genomic Region	DVUA0068 Membrane protein, putative Details for DVUA0068 - Membrane protein, putative GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVUA0068 Tuberculist Genomic Region
DVU1292 Uncharacterized protein Details for DVU1292 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1292 Tuberculist Genomic Region	DVUA0076 ABC transporter, ATP-binding protein Details for DVUA0076 - ABC transporter, ATP-binding protein GO Terms: GO:0005524, GO:0016887 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVUA0076 Tuberculist Genomic Region
DVU1682 GAF domain protein Details for DVU1682 - GAF domain protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1682 Tuberculist Genomic Region	DVU2051 Uncharacterized protein Details for DVU2051 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2051 Tuberculist Genomic Region
DVU1843 Uncharacterized protein Details for DVU1843 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1843 Tuberculist Genomic Region	DVU2372 Uncharacterized protein Details for DVU2372 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2372 Tuberculist Genomic Region
DVU2371 N-acetylmuramoyl-L-alanine amidase, putative Details for DVU2371 - N-acetylmuramoyl-L-alanine amidase, putative GO Terms: GO:0008745, GO:0009253 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2371 Tuberculist Genomic Region	DVU3088 ATP-dependent RNA helicase, DEAD/DEAH box family Details for DVU3088 - ATP-dependent RNA helicase, DEAD/DEAH box family GO Terms: GO:0005524, GO:0004386, GO:0003676 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3088 Tuberculist Genomic Region
DVU3070 Putative Holliday junction resolvase Details for DVU3070 - Putative Holliday junction resolvase GO Terms: GO:0006310, GO:0006281, GO:0005737, GO:0004518, GO:0003676 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3070 Tuberculist Genomic Region

Motifs

Motif 1:

e-value: 1300 Motif 2:

e-value: 21000

Module Median Expression Profiles

Module Plots

Regulation

Regulator	Interaction	Influence Weight	Other Influences
DVU1517 Transcriptional regulator cII, putative	down-regulates	-0.15	DVU1517
DVU1572 Transcriptional regulator, CarD family	up-regulates	0.13	DVU1572
DVU2097 Transcriptional regulator, putative	up-regulates	0.14	DVU2097
DVU3142 Sigma-54 dependent transcriptional regulator	down-regulates	-0.21	DVU3142
DVU3255 Transcriptional regulator, CopG family	up-regulates	0.33	DVU3255

GO Enrichment

Category: BP
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
BP	GO:0006310	DNA recombination	4	0.01	1	0.0110
BP	GO:0006259	DNA metabolic process	17	0.05	1	0.0460

Category: MF
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
MF	GO:0016811	hydrolase activity, acting on carbon-nit...	4	0.02	1	0.0155
MF	GO:0016810	hydrolase activity, acting on carbon-nit...	9	0.04	1	0.0347

Essentiality

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