Desulfovibrio vulgaris Hildenborough Module 234 Residual: 0.41

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Summary

Residual: 0.41 Score: -51.2457 version: dvh_cmonkey_11_Mar_02

Members

DVU0351 Cytidine 5'monophosphate N-acetylneuraminic acid synthetase, putative/polysaccharide biosynthesis protein

Details for DVU0351 - Cytidine 5'monophosphate N-acetylneuraminic acid synthetase, putative/polysaccharide biosynthesis protein

GO Terms: GO:0030246, GO:0030259, GO:0009103, GO:0016758

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0351

Tuberculist Genomic Region

DVUA0043 Polysaccharide deacetylase family protein

Details for DVUA0043 - Polysaccharide deacetylase family protein

GO Terms: GO:0005975, GO:0016810

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVUA0043

Tuberculist Genomic Region

DVU1035 Glucokinase, putative

Details for DVU1035 - Glucokinase, putative

GO Terms: GO:0005524, GO:0004340, GO:0006096

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1035

Tuberculist Genomic Region

DVUA0096 Major facilitator superfamily protein

Details for DVUA0096 - Major facilitator superfamily protein

GO Terms: GO:0016021, GO:0055085, GO:0005215

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVUA0096

Tuberculist Genomic Region

DVU1239 Membrane protein, putative

Details for DVU1239 - Membrane protein, putative

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1239

Tuberculist Genomic Region

DVUA0139 Outer membrane autotransporter barrel domain protein

Details for DVUA0139 - Outer membrane autotransporter barrel domain protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVUA0139

Tuberculist Genomic Region

DVU1508 Uncharacterized protein

Details for DVU1508 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1508

Tuberculist Genomic Region

DVUA0140 Uncharacterized protein

Details for DVUA0140 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVUA0140

Tuberculist Genomic Region

DVU1858 Cold shock domain protein

Details for DVU1858 - Cold shock domain protein

GO Terms: GO:0003677, GO:0005737, GO:0006355

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1858

Tuberculist Genomic Region

DVU0070 Ser/Thr protein phosphatase family protein

Details for DVU0070 - Ser/Thr protein phosphatase family protein

GO Terms: GO:0016787

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0070

Tuberculist Genomic Region

DVU2283 Uncharacterized protein

Details for DVU2283 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2283

Tuberculist Genomic Region

DVU2456 Uncharacterized protein

Details for DVU2456 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2456

Tuberculist Genomic Region

DVU2336 Carboxyl-terminal protease

Details for DVU2336 - Carboxyl-terminal protease

GO Terms: GO:0008236

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2336

Tuberculist Genomic Region

DVU2517 Uncharacterized protein

Details for DVU2517 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2517

Tuberculist Genomic Region

DVU2628 TPR domain protein

Details for DVU2628 - TPR domain protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2628

Tuberculist Genomic Region

DVU2755 1,4-dihydroxy-6-naphtoate synthase

Details for DVU2755 - 1,4-dihydroxy-6-naphtoate synthase

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2755

Tuberculist Genomic Region

DVU2874 Uncharacterized protein

Details for DVU2874 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2874

Tuberculist Genomic Region

DVU3211 Uncharacterized protein

Details for DVU3211 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3211

Tuberculist Genomic Region

DVU3110 L-aspartate oxidase, putative

Details for DVU3110 - L-aspartate oxidase, putative

GO Terms: GO:0016491

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3110

Tuberculist Genomic Region

DVUA0055 Membrane protein, putative

Details for DVUA0055 - Membrane protein, putative

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVUA0055

Tuberculist Genomic Region

DVU3325 Uncharacterized protein

Details for DVU3325 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3325

Tuberculist Genomic Region

Displaying 1 - 21 of 21

Motifs

Motif 1: e-value: 0.48 e-value: 31

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

DVU0946

Sigma-54 dependent transcriptional regulator/response regulator
 down-regulates -0.12

DVU0946

DVU1063

Transcriptional regulatory protein
 up-regulates 0.11

DVU1063

DVU1561

Molybdenum-binding protein, HTH domain
 up-regulates 0.13

DVU1561

DVU2557

Bifunctional ligase/repressor BirA
up-regulates 0.16

DVU2557

DVU2799

Transcriptional regulator, MarR family
 down-regulates -0.11

DVU2799

DVU2953

Transcriptional regulator, GntR family
 up-regulates 0.12

DVU2953

DVU3220

Sigma-54 dependent transcriptional regulator/response regulator
 up-regulates 0.18

DVU3220
[field_regulator_taxonomy_regulat_1] up-regulates 0.12

Formate
[field_regulator_taxonomy_regulat_1] down-regulates -0.16

Megaplasmid minus
[field_regulator_taxonomy_regulat_1] down-regulates -0.13

Thiosulfate

GO Enrichment

Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0030246 carbohydrate binding 4 0.02 1 0.0190
MF GO:0008236 serine-type peptidase activity 5 0.02 1 0.0230
MF GO:0017171 serine hydrolase activity 5 0.02 1 0.0230

Comments

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