Desulfovibrio vulgaris Hildenborough Module 235 Residual: 0.49

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Summary

Residual: 0.49 Score: -31.0467 version: dvh_cmonkey_11_Mar_02

Members

DVU0753 Amino acid ABC transporter, ATP-binding protein

Details for DVU0753 - Amino acid ABC transporter, ATP-binding protein

GO Terms: GO:0005524, GO:0016887

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0753

Tuberculist Genomic Region

DVU1299 30S ribosomal protein S7

Details for DVU1299 - 30S ribosomal protein S7

GO Terms: GO:0019843, GO:0015935, GO:0003735, GO:0000049, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1299

Tuberculist Genomic Region

DVU2216 Translation initiation factor IF-1 2

Details for DVU2216 - Translation initiation factor IF-1 2

GO Terms: GO:0005737, GO:0003743

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2216

Tuberculist Genomic Region

DVU1300 Elongation factor G

Details for DVU1300 - Elongation factor G

GO Terms: GO:0005525, GO:0003924, GO:0005737, GO:0003746

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1300

Tuberculist Genomic Region

DVU3116 Peptide chain release factor 3

Details for DVU3116 - Peptide chain release factor 3

GO Terms: GO:0005525, GO:0003924, GO:0005737, GO:0006449, GO:0016149

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3116

Tuberculist Genomic Region

DVU1571 Transcription termination factor Rho

Details for DVU1571 - Transcription termination factor Rho

GO Terms: GO:0005524, GO:0006353, GO:0003723, GO:0008186, GO:0004386, GO:0006355

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1571

Tuberculist Genomic Region

DVU0399 Uncharacterized protein

Details for DVU0399 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0399

Tuberculist Genomic Region

DVU1622 Phosphoribosylformylglycinamidine synthase I

Details for DVU1622 - Phosphoribosylformylglycinamidine synthase I

GO Terms: GO:0006189, GO:0005737, GO:0004642

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1622

Tuberculist Genomic Region

DVU0503 Polyribonucleotide nucleotidyltransferase

Details for DVU0503 - Polyribonucleotide nucleotidyltransferase

GO Terms: GO:0000175, GO:0003723, GO:0006396, GO:0005737, GO:0006402, GO:0000287, GO:0004654

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0503

Tuberculist Genomic Region

DVU2298 Glycine/betaine/L-proline ABC transporter, permease protein

Details for DVU2298 - Glycine/betaine/L-proline ABC transporter, permease protein

GO Terms: GO:0016021, GO:0006810

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2298

Tuberculist Genomic Region

DVU0507 Uncharacterized protein

Details for DVU0507 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0507

Tuberculist Genomic Region

DVU2299 Glycine/betaine/L-proline ABC transporter, ATP binding protein

Details for DVU2299 - Glycine/betaine/L-proline ABC transporter, ATP binding protein

GO Terms: GO:0005524, GO:0016887, GO:0031460, GO:0016020

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2299

Tuberculist Genomic Region

DVU0508 Translation initiation factor IF-2

Details for DVU0508 - Translation initiation factor IF-2

GO Terms: GO:0005525, GO:0003924, GO:0005737, GO:0003743

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0508

Tuberculist Genomic Region

DVU2913 Lipoprotein, putative

Details for DVU2913 - Lipoprotein, putative

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2913

Tuberculist Genomic Region

DVU0510 Transcription termination/antitermination protein NusA

Details for DVU0510 - Transcription termination/antitermination protein NusA

GO Terms: GO:0003723, GO:0031554, GO:0003700

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0510

Tuberculist Genomic Region

DVU2914 Peptide chain release factor 1

Details for DVU2914 - Peptide chain release factor 1

GO Terms: GO:0005737, GO:0016149

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2914

Tuberculist Genomic Region

DVU0809 Aspartyl/glutamyl-tRNA

Details for DVU0809 - Aspartyl/glutamyl-tRNA

GO Terms: GO:0005524, GO:0050567, GO:0006450, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0809

Tuberculist Genomic Region

DVU3206 Phosphoribosylaminoimidazolecarboxamide formyltransferase, putative

Details for DVU3206 - Phosphoribosylaminoimidazolecarboxamide formyltransferase, putative

GO Terms: GO:0003937, GO:0004643, GO:0006164

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3206

Tuberculist Genomic Region

DVU0810 Uncharacterized protein

Details for DVU0810 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0810

Tuberculist Genomic Region

DVU3307 3-octaprenyl-4-hydroxybenzoate carboxy-lyase

Details for DVU3307 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase

GO Terms: GO:0016829

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3307

Tuberculist Genomic Region

DVU1247 Uncharacterized protein

Details for DVU1247 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1247

Tuberculist Genomic Region

DVU3308 UPF0173 metal-dependent hydrolase DVU_3308

Details for DVU3308 - UPF0173 metal-dependent hydrolase DVU_3308

GO Terms: GO:0016787

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3308

Tuberculist Genomic Region

DVU1248 Arginine--tRNA ligase

Details for DVU1248 - Arginine--tRNA ligase

GO Terms: GO:0005524, GO:0004814, GO:0006420, GO:0005737

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1248

Tuberculist Genomic Region

DVU3310 ATP-dependent RNA helicase, DEAD/DEAH family

Details for DVU3310 - ATP-dependent RNA helicase, DEAD/DEAH family

GO Terms: GO:0005524, GO:0004386, GO:0003676

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3310

Tuberculist Genomic Region

DVU1298 30S ribosomal protein S12

Details for DVU1298 - 30S ribosomal protein S12

GO Terms: GO:0019843, GO:0015935, GO:0003735, GO:0000049, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1298

Tuberculist Genomic Region

Displaying 1 - 25 of 25

Motifs

Motif 1: e-value: 400 e-value: 14000

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

DVU0063

Transcriptional regulator, MarR family
 up-regulates 0.21

DVU0063

DVU0118

Sigma-54 dependent transcriptional regulator/response regulator
 down-regulates -0.12

DVU0118

DVU0682

DNA-binding protein, putative
 up-regulates 0.15

DVU0682

DVU1547

Sensory box protein
 down-regulates -0.16

DVU1547

DVU1949

Nif-specific regulatory protein
 up-regulates 0.11

DVU1949

DVU2111

Transcriptional regulator, LysR family
 up-regulates 0.14

DVU2111

DVU2547

Transcriptional regulator, putative
 down-regulates -0.16

DVU2547

DVU2557

Bifunctional ligase/repressor BirA
down-regulates -0.14

DVU2557

DVU2802

Transcriptional regulator, GntR family
 down-regulates -0.17

DVU2802

DVU2989

Psp operon transcriptional activator
 up-regulates 0.20

DVU2989

GO Enrichment

Category: BP
Category GO ID GO Term Annotated Expected Significant p-value
BP GO:0006188 IMP biosynthetic process 11 0.03 1 0.0300
BP GO:0006189 'de novo' IMP biosynthetic process 11 0.03 1 0.0300
BP GO:0046040 IMP metabolic process 11 0.03 1 0.0300
BP GO:0006164 purine nucleotide biosynthetic process 17 0.05 1 0.0460
BP GO:0009127 purine nucleoside monophosphate biosynth... 17 0.05 1 0.0460
BP GO:0009152 purine ribonucleotide biosynthetic proce... 17 0.05 1 0.0460
BP GO:0009168 purine ribonucleoside monophosphate bios... 17 0.05 1 0.0460
BP GO:0072522 purine-containing compound biosynthetic ... 17 0.05 1 0.0460
BP GO:0006163 purine nucleotide metabolic process 18 0.05 1 0.0490
BP GO:0009126 purine nucleoside monophosphate metaboli... 18 0.05 1 0.0490
BP GO:0009150 purine ribonucleotide metabolic process 18 0.05 1 0.0490
BP GO:0009167 purine ribonucleoside monophosphate meta... 18 0.05 1 0.0490
Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0005525 GTP binding 24 0.30 3 0.0028
MF GO:0019001 guanyl nucleotide binding 29 0.36 3 0.0048
MF GO:0032561 guanyl ribonucleotide binding 29 0.36 3 0.0048
MF GO:0035639 purine ribonucleoside triphosphate bindi... 325 4.06 9 0.0079
MF GO:0001882 nucleoside binding 327 4.08 9 0.0083
MF GO:0001883 purine nucleoside binding 327 4.08 9 0.0083
MF GO:0032549 ribonucleoside binding 327 4.08 9 0.0083
MF GO:0032550 purine ribonucleoside binding 327 4.08 9 0.0083
MF GO:0032555 purine ribonucleotide binding 332 4.15 9 0.0092
MF GO:0017076 purine nucleotide binding 333 4.16 9 0.0094
MF GO:0032553 ribonucleotide binding 345 4.31 9 0.0120
MF GO:0097367 carbohydrate derivative binding 345 4.31 9 0.0120
MF GO:0043168 anion binding 371 4.63 9 0.0197
MF GO:0000166 nucleotide binding 377 4.71 9 0.0219
MF GO:1901265 nucleoside phosphate binding 377 4.71 9 0.0219
MF GO:0036094 small molecule binding 383 4.78 9 0.0244
MF GO:0097159 organic cyclic compound binding 611 7.63 12 0.0246
MF GO:1901363 heterocyclic compound binding 611 7.63 12 0.0246
MF GO:0003723 RNA binding 54 0.67 3 0.0269
MF GO:0016814 hydrolase activity, acting on carbon-nit... 3 0.04 1 0.0370
MF GO:0019843 rRNA binding 27 0.34 2 0.0428
MF GO:0043167 ion binding 422 5.27 9 0.0454
MF GO:0008408 3'-5' exonuclease activity 4 0.05 1 0.0491

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