Desulfovibrio vulgaris Hildenborough Module 282 Residual: 0.45

×

Error message

  • Unable to create CTools CSS cache directory. Check the permissions on your files directory.
  • Unable to create CTools CSS cache directory. Check the permissions on your files directory.

Summary

Residual: 0.45 Score: -55.0183 version: dvh_cmonkey_11_Mar_02

Members

DVU0551 High-affinity branched-chain amino acid ABC transporter ATP-binding protein

Details for DVU0551 - High-affinity branched-chain amino acid ABC transporter ATP-binding protein

GO Terms: GO:0005524, GO:0016887

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0551

Tuberculist Genomic Region

DVU1292 Uncharacterized protein

Details for DVU1292 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1292

Tuberculist Genomic Region

DVU0789 Rod shape-determining protein MreB

Details for DVU0789 - Rod shape-determining protein MreB

GO Terms: GO:0000902

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0789

Tuberculist Genomic Region

DVU1579 Cysteine--tRNA ligase

Details for DVU1579 - Cysteine--tRNA ligase

GO Terms: GO:0005524, GO:0004817, GO:0006423, GO:0005737, GO:0008270

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1579

Tuberculist Genomic Region

DVU1291 Uncharacterized protein

Details for DVU1291 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1291

Tuberculist Genomic Region

DVU1582 Uncharacterized protein

Details for DVU1582 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1582

Tuberculist Genomic Region

DVU1583 TPR domain protein

Details for DVU1583 - TPR domain protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1583

Tuberculist Genomic Region

DVU1584 RNA polymerase sigma factor

Details for DVU1584 - RNA polymerase sigma factor

GO Terms: GO:0003677, GO:0006352, GO:0003700, GO:0016987

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1584

Tuberculist Genomic Region

DVU1620 Uncharacterized protein

Details for DVU1620 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1620

Tuberculist Genomic Region

DVU1587 Acetyltransferase, GNAT family

Details for DVU1587 - Acetyltransferase, GNAT family

GO Terms: GO:0008080

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1587

Tuberculist Genomic Region

DVU1673 Acyltransferase, putative

Details for DVU1673 - Acyltransferase, putative

GO Terms: GO:0016021, GO:0009244, GO:0016746

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1673

Tuberculist Genomic Region

DVU1663 Permease, putative

Details for DVU1663 - Permease, putative

GO Terms: GO:0016021

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1663

Tuberculist Genomic Region

DVU2890 Conserved domain protein

Details for DVU2890 - Conserved domain protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2890

Tuberculist Genomic Region

DVU1672 Uncharacterized protein

Details for DVU1672 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1672

Tuberculist Genomic Region

DVU0734 Uroporphyrinogen III synthase/methyltransferase

Details for DVU0734 - Uroporphyrinogen III synthase/methyltransferase

GO Terms: GO:0008168, GO:0006779, GO:0043115, GO:0004852

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0734

Tuberculist Genomic Region

DVU1818 Protein-export membrane protein SecF

Details for DVU1818 - Protein-export membrane protein SecF

GO Terms: GO:0015450, GO:0016021, GO:0005622, GO:0065002, GO:0005886, GO:0006605, GO:0043952

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1818

Tuberculist Genomic Region

DVU1082 3'-5' exonuclease domain protein

Details for DVU1082 - 3'-5' exonuclease domain protein

GO Terms: GO:0008408, GO:0003676

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1082

Tuberculist Genomic Region

DVU1828 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG

Details for DVU1828 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG

GO Terms: GO:0005737, GO:0050660, GO:0002098

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1828

Tuberculist Genomic Region

Displaying 1 - 18 of 18

Motifs

Motif 1: e-value: 0.18 e-value: 500

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

DVU0118

Sigma-54 dependent transcriptional regulator/response regulator
 down-regulates -0.16

DVU0118

DVU2114

Sigma-54 dependent transcriptional regulator/response regulator
 up-regulates 0.24

DVU2114

DVU2275

Sigma-54 dependent transcriptional regulator
 up-regulates 0.17

DVU2275

DVU3255

Transcriptional regulator, CopG family
 up-regulates 0.36

DVU3255

GO Enrichment

Category: BP
Category GO ID GO Term Annotated Expected Significant p-value
BP GO:0000902 cell morphogenesis 3 0.01 1 0.0081
BP GO:0009653 anatomical structure morphogenesis 3 0.01 1 0.0081
BP GO:0032502 developmental process 3 0.01 1 0.0081
BP GO:0032989 cellular component morphogenesis 3 0.01 1 0.0081
BP GO:0044767 single-organism developmental process 3 0.01 1 0.0081
BP GO:0048856 anatomical structure development 3 0.01 1 0.0081
BP GO:0048869 cellular developmental process 3 0.01 1 0.0081
Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0008320 protein transmembrane transporter activi... 4 0.02 1 0.0220
MF GO:0008408 3'-5' exonuclease activity 4 0.02 1 0.0220
MF GO:0015450 P-P-bond-hydrolysis-driven protein trans... 4 0.02 1 0.0220
MF GO:0022884 macromolecule transmembrane transporter ... 4 0.02 1 0.0220
MF GO:0008080 N-acetyltransferase activity 5 0.03 1 0.0270
MF GO:0008565 protein transporter activity 5 0.03 1 0.0270
MF GO:0015399 primary active transmembrane transporter... 5 0.03 1 0.0270
MF GO:0015405 P-P-bond-hydrolysis-driven transmembrane... 5 0.03 1 0.0270
MF GO:0004527 exonuclease activity 6 0.03 1 0.0320
MF GO:0016410 N-acyltransferase activity 6 0.03 1 0.0320
MF GO:0016407 acetyltransferase activity 7 0.04 1 0.0380

Comments

Log in to post comments