Methanococcus maripaludis S2 Module 19 Residual: 0.40

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Summary

Residual: 0.40 Score: -16.1765 version: mmp_cmonkey_11_Oct_11

Members

MMP0041 transcription initiation factor B (NCBI)

Details for MMP0041 - transcription initiation factor B (NCBI)

GO Terms: GO:0006355, GO:0006352, GO:0005667, GO:0003700, GO:0005515, GO:0008270

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0041

Tuberculist Genomic Region

MMP1249 tungsten containing formylmethanofuran dehydrogenase, subunit C (NCBI)

Details for MMP1249 - tungsten containing formylmethanofuran dehydrogenase, subunit C (NCBI)

GO Terms: GO:0008152, GO:0018493

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1249

Tuberculist Genomic Region

MMP0042 conserved hypothetical protein (NCBI)

Details for MMP0042 - conserved hypothetical protein (NCBI)

GO Terms: GO:0006364, GO:0005732, GO:0019843

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0042

Tuberculist Genomic Region

MMP1257 conserved hypothetical protein (NCBI)

Details for MMP1257 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1257

Tuberculist Genomic Region

MMP0278 Conserved hypothetical protein with 2 CBS domains (NCBI)

Details for MMP0278 - Conserved hypothetical protein with 2 CBS domains (NCBI)

GO Terms: GO:0008152, GO:0003824

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0278

Tuberculist Genomic Region

MMP1258 Delta-aminolevulinic acid dehydratase (NCBI)

Details for MMP1258 - Delta-aminolevulinic acid dehydratase (NCBI)

GO Terms: GO:0033014, GO:0046872, GO:0004655

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1258

Tuberculist Genomic Region

MMP0344 conserved hypothetical archaeal protein (NCBI)

Details for MMP0344 - conserved hypothetical archaeal protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0344

Tuberculist Genomic Region

MMP1475 hypothetical protein (NCBI)

Details for MMP1475 - hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1475

Tuberculist Genomic Region

MMP0405 GTP cyclohydrolase III (NCBI)

Details for MMP0405 - GTP cyclohydrolase III (NCBI)

GO Terms: GO:0009058, GO:0043740

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0405

Tuberculist Genomic Region

MMP1511 Sodium:alanine symporter (NCBI)

Details for MMP1511 - Sodium:alanine symporter (NCBI)

GO Terms: GO:0006814, GO:0016020, GO:0005283

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1511

Tuberculist Genomic Region

MMP0407 conserved hypothetical archaeal protein with 2 CBS domains. (NCBI)

Details for MMP0407 - conserved hypothetical archaeal protein with 2 CBS domains. (NCBI)

GO Terms: GO:0008152, GO:0003824

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0407

Tuberculist Genomic Region

MMP1555 Methyl-coenzyme M reductase I, beta subunit (NCBI)

Details for MMP1555 - Methyl-coenzyme M reductase I, beta subunit (NCBI)

GO Terms: GO:0015948, GO:0050524

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1555

Tuberculist Genomic Region

MMP0632 ATP/GTP-binding site motif A (P-loop) (NCBI)

Details for MMP0632 - ATP/GTP-binding site motif A (P-loop) (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0632

Tuberculist Genomic Region

MMP1556 Methyl-coenzyme M reductase I, protein D (NCBI)

Details for MMP1556 - Methyl-coenzyme M reductase I, protein D (NCBI)

GO Terms: GO:0015948

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1556

Tuberculist Genomic Region

MMP0736 conserved hypothetical archaeal protein (NCBI)

Details for MMP0736 - conserved hypothetical archaeal protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0736

Tuberculist Genomic Region

MMP1557 methyl coenzyme M reductase I, protein C (NCBI)

Details for MMP1557 - methyl coenzyme M reductase I, protein C (NCBI)

GO Terms: GO:0015948, GO:0003824

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1557

Tuberculist Genomic Region

MMP0762 TPR repeat (NCBI)

Details for MMP0762 - TPR repeat (NCBI)

GO Terms: GO:0005488

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0762

Tuberculist Genomic Region

MMP1558 Methyl-coenzyme M reductase I, gamma subunit (NCBI)

Details for MMP1558 - Methyl-coenzyme M reductase I, gamma subunit (NCBI)

GO Terms: GO:0015948, GO:0050524

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1558

Tuberculist Genomic Region

MMP1067 Succinate dehydrogenase/fumarate reductase iron-sulfur subunit // Methanosarcina type heterodisulfide reductase subunit D (NCBI)

Details for MMP1067 - Succinate dehydrogenase/fumarate reductase iron-sulfur subunit // Methanosarcina type heterodisulfide reductase subunit D (NCBI)

GO Terms: GO:0006118, GO:0006099, GO:0009055, GO:0000104, GO:0051536

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1067

Tuberculist Genomic Region

MMP1559 Methyl-coenzyme M reductase I, alpha subunit (NCBI)

Details for MMP1559 - Methyl-coenzyme M reductase I, alpha subunit (NCBI)

GO Terms: GO:0015948, GO:0050524

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1559

Tuberculist Genomic Region

MMP1223 conserved hypothetical archaeal protein (NCBI)

Details for MMP1223 - conserved hypothetical archaeal protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1223

Tuberculist Genomic Region

MMP1586 conserved hypothetical archaeal protein (NCBI)

Details for MMP1586 - conserved hypothetical archaeal protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1586

Tuberculist Genomic Region

MMP1244 tungsten containing formylmethanofuran dehydrogenase, subunit H (NCBI)

Details for MMP1244 - tungsten containing formylmethanofuran dehydrogenase, subunit H (NCBI)

GO Terms: GO:0006118, GO:0018493, GO:0003677, GO:0051536, GO:0009055

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1244

Tuberculist Genomic Region

MMP1609 Formylmethanofuran: tetrahydromethanopterin formyltransferase (Ftr) (NCBI)

Details for MMP1609 - Formylmethanofuran: tetrahydromethanopterin formyltransferase (Ftr) (NCBI)

GO Terms: GO:0006730, GO:0030270

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1609

Tuberculist Genomic Region

MMP1245 tungsten containing formylmethanofuran dehydrogenase, subunit F (NCBI)

Details for MMP1245 - tungsten containing formylmethanofuran dehydrogenase, subunit F (NCBI)

GO Terms: GO:0006118, GO:0051536, GO:0009055

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1245

Tuberculist Genomic Region

MMP1610 conserved hypothetical protein (NCBI)

Details for MMP1610 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1610

Tuberculist Genomic Region

MMP1246 tungsten containing formylmethanofuran dehydrogenase, subunit G (NCBI)

Details for MMP1246 - tungsten containing formylmethanofuran dehydrogenase, subunit G (NCBI)

GO Terms: GO:0006118, GO:0051536, GO:0009055, GO:0018493

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1246

Tuberculist Genomic Region

MMP1712 Transcriptional regulator, LysR Family Member (NCBI)

Details for MMP1712 - Transcriptional regulator, LysR Family Member (NCBI)

GO Terms: GO:0006355, GO:0003700

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1712

Tuberculist Genomic Region

MMP1247 tungsten containing formylmethanofuran dehydrogenase, subunit D (NCBI)

Details for MMP1247 - tungsten containing formylmethanofuran dehydrogenase, subunit D (NCBI)

GO Terms: GO:0018493, GO:0030151

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1247

Tuberculist Genomic Region

MMP1637 conserved hypothetical archaeal protein (NCBI)

Details for MMP1637 - conserved hypothetical archaeal protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1637

Tuberculist Genomic Region

MMP1248 tungsten containing formylmethanofuran dehydrogenase, subunit A (NCBI)

Details for MMP1248 - tungsten containing formylmethanofuran dehydrogenase, subunit A (NCBI)

GO Terms: GO:0016810, GO:0018493, GO:0003676, GO:0004519

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1248

Tuberculist Genomic Region

Displaying 1 - 31 of 31

Motifs

Motif 1: e-value: 74 e-value: 11000

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

MMP1100

putative transricptional regulator (NCBI)
 up-regulates 0.33

MMP1100

MMP0052

Conserved Hypothetical protein with 2 CBS domains (NCBI)

Formate

 up-regulates 0.31

MMP0052

Formate

MMP0097

Transcriptional regulator protein, Helix-turn-helix motif (NCBI)

Formate

 up-regulates 0.23

MMP0097

Formate

GO Enrichment

Category: BP
Category GO ID GO Term Annotated Expected Significant p-value
BP GO:0009061 anaerobic respiration 4 0.04 1 0.0410
BP GO:0015947 methane metabolic process 4 0.04 1 0.0410
BP GO:0015948 methanogenesis 4 0.04 1 0.0410
BP GO:0015975 energy derivation by oxidation of reduce... 4 0.04 1 0.0410
BP GO:0043446 cellular alkane metabolic process 4 0.04 1 0.0410
BP GO:0043447 alkane biosynthetic process 4 0.04 1 0.0410
Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0016491 oxidoreductase activity 78 1.41 5 0.0089

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