Methanococcus maripaludis S2 Module 29 Residual: 0.34

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Summary

Residual: 0.34 Score: -13.2441 version: mmp_cmonkey_11_Oct_11

Members

MMP0101 conserved hypothetical protein (NCBI)

Details for MMP0101 - conserved hypothetical protein (NCBI)

GO Terms: GO:0008152, GO:0003824

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0101

Tuberculist Genomic Region

MMP1432 Adenylosuccinate synthase (NCBI)

Details for MMP1432 - Adenylosuccinate synthase (NCBI)

GO Terms: GO:0006164, GO:0004019, GO:0005525

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1432

Tuberculist Genomic Region

MMP0221 Sodium/proline symporter (NCBI)

Details for MMP0221 - Sodium/proline symporter (NCBI)

GO Terms: GO:0006814, GO:0015824, GO:0016021, GO:0005298, GO:0031402

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0221

Tuberculist Genomic Region

MMP1434 LSU ribosomal protein L24A (NCBI)

Details for MMP1434 - LSU ribosomal protein L24A (NCBI)

GO Terms: GO:0006355, GO:0003711

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1434

Tuberculist Genomic Region

MMP0286 conserved hypothetical protein (NCBI)

Details for MMP0286 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0286

Tuberculist Genomic Region

MMP1523 SecD/SecF/SecDF export membrane protein (NCBI)

Details for MMP1523 - SecD/SecF/SecDF export membrane protein (NCBI)

GO Terms: GO:0015628, GO:0015627, GO:0008565

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1523

Tuberculist Genomic Region

MMP0567

Details for MMP0567 -

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0567

Tuberculist Genomic Region

MMP1524 SecD/SecF/SecDF export membrane protein (NCBI)

Details for MMP1524 - SecD/SecF/SecDF export membrane protein (NCBI)

GO Terms: GO:0015628, GO:0015627, GO:0016020, GO:0008565, GO:0008158

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1524

Tuberculist Genomic Region

MMP0657 conserved hypothetical protein (NCBI)

Details for MMP0657 - conserved hypothetical protein (NCBI)

GO Terms: GO:0008152, GO:0016597

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0657

Tuberculist Genomic Region

MMP1537 Cytochrome c heme-binding site (NCBI)

Details for MMP1537 - Cytochrome c heme-binding site (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1537

Tuberculist Genomic Region

MMP0839 hypothetical protein (NCBI)

Details for MMP0839 - hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0839

Tuberculist Genomic Region

MMP1538 predicted transporter component (NCBI)

Details for MMP1538 - predicted transporter component (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1538

Tuberculist Genomic Region

MMP0840 Transcriptional regulator, TetR Family Member (NCBI)

Details for MMP0840 - Transcriptional regulator, TetR Family Member (NCBI)

GO Terms: GO:0006355, GO:0016481, GO:0003700, GO:0016566

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0840

Tuberculist Genomic Region

MMP0603 translation initiation factor 1A (aIF-1A) (NCBI)

Details for MMP0603 - translation initiation factor 1A (aIF-1A) (NCBI)

GO Terms: GO:0006413, GO:0003723, GO:0003743

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0603

Tuberculist Genomic Region

MMP1030 conserved hypothetical archaeal protein (NCBI)

Details for MMP1030 - conserved hypothetical archaeal protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1030

Tuberculist Genomic Region

MMP1407 Protein of unknown function UPF0086 (NCBI)

Details for MMP1407 - Protein of unknown function UPF0086 (NCBI)

GO Terms: GO:0008033, GO:0030677, GO:0004526

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1407

Tuberculist Genomic Region

MMP1031 Adenylate kinase (NCBI)

Details for MMP1031 - Adenylate kinase (NCBI)

GO Terms: GO:0004017

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1031

Tuberculist Genomic Region

MMP1408 SSU ribosomal protein S17P (NCBI)

Details for MMP1408 - SSU ribosomal protein S17P (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1408

Tuberculist Genomic Region

MMP1422 Aldehyde dehydrogenase:SecY protein (NCBI)

Details for MMP1422 - Aldehyde dehydrogenase:SecY protein (NCBI)

GO Terms: GO:0009306, GO:0016020, GO:0015450

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1422

Tuberculist Genomic Region

MMP1409 LSU ribosomal protein L14P (NCBI)

Details for MMP1409 - LSU ribosomal protein L14P (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1409

Tuberculist Genomic Region

Displaying 1 - 20 of 20

Motifs

Motif 1: e-value: 1700 e-value: 9300

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

MMP0568

transcriptional regulator related protein (NCBI)
 up-regulates 0.42

MMP0568

MMP0052

Conserved Hypothetical protein with 2 CBS domains (NCBI)
 down-regulates -0.31

MMP0052

MMP0907

predicted archaeal transcriptional regulator (NCBI)

MMP1646

conserved hypothetical archaeal protein (NCBI)
 up-regulates 0.23

MMP0907

MMP1646

MMP1065

conserved hypothetical archaeal protein (NCBI)
 down-regulates -0.17

MMP1065

GO Enrichment

Category: BP
Category GO ID GO Term Annotated Expected Significant p-value
BP GO:0006167 AMP biosynthetic process 3 0.03 1 0.0310
BP GO:0046033 AMP metabolic process 3 0.03 1 0.0310
BP GO:0034654 nucleobase-containing compound biosynthe... 35 0.36 2 0.0320
BP GO:0006355 regulation of transcription, DNA-templat... 4 0.04 1 0.0410
BP GO:0019219 regulation of nucleobase-containing comp... 4 0.04 1 0.0410
BP GO:0051171 regulation of nitrogen compound metaboli... 4 0.04 1 0.0410
BP GO:0051252 regulation of RNA metabolic process 4 0.04 1 0.0410
BP GO:1903506 regulation of nucleic acid-templated tra... 4 0.04 1 0.0410
BP GO:2001141 regulation of RNA biosynthetic process 4 0.04 1 0.0410
Category: CC
Category GO ID GO Term Annotated Expected Significant p-value
CC GO:0016020 membrane 100 2.76 5 0.0490
Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0003723 RNA binding 57 0.52 4 0.0008
MF GO:0003676 nucleic acid binding 122 1.10 5 0.0015
MF GO:0005488 binding 431 3.90 7 0.0164
MF GO:0019843 rRNA binding 26 0.24 2 0.0206
MF GO:0097159 organic cyclic compound binding 329 2.98 6 0.0259
MF GO:1901363 heterocyclic compound binding 329 2.98 6 0.0259

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