Methanococcus maripaludis S2 Module 130 Residual: 0.23

×

Error message

  • Unable to create CTools CSS cache directory. Check the permissions on your files directory.
  • Unable to create CTools CSS cache directory. Check the permissions on your files directory.

Summary

Residual: 0.23 Score: -27.3846 version: mmp_cmonkey_11_Oct_11

Members

MMP0034 conserved hypothetical protein (NCBI)

Details for MMP0034 - conserved hypothetical protein (NCBI)

GO Terms: GO:0006144, GO:0004846

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0034

Tuberculist Genomic Region

MMP0952 translation initiation factor IF-5a (NCBI)

Details for MMP0952 - translation initiation factor IF-5a (NCBI)

GO Terms: GO:0006413, GO:0003743

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0952

Tuberculist Genomic Region

MMP1370 translation elongation factor EF-1, subunit alpha (NCBI)

Details for MMP1370 - translation elongation factor EF-1, subunit alpha (NCBI)

GO Terms: GO:0006414, GO:0005737, GO:0008547, GO:0003924, GO:0003746, GO:0005525

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1370

Tuberculist Genomic Region

MMP1362 Glycoside hydrolase, family 1:DNA-directed RNA polymerase, beta subunit:ATP/GTP-binding site motif A (P-loop) (NCBI)

Details for MMP1362 - Glycoside hydrolase, family 1:DNA-directed RNA polymerase, beta subunit:ATP/GTP-binding site motif A (P-loop) (NCBI)

GO Terms: GO:0006350, GO:0005975, GO:0003902, GO:0003900, GO:0003677, GO:0003899, GO:0004553, GO:0003901

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1362

Tuberculist Genomic Region

MMP0223 conserved hypothetical protein (NCBI)

Details for MMP0223 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0223

Tuberculist Genomic Region

MMP1363 RNA polymerase, alpha subunit (NCBI)

Details for MMP1363 - RNA polymerase, alpha subunit (NCBI)

GO Terms: GO:0006350, GO:0005634, GO:0003902, GO:0003901, GO:0003677, GO:0003900, GO:0008270, GO:0003899

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1363

Tuberculist Genomic Region

MMP0224 glutamate-1-semialdehyde aminotransferase (NCBI)

Details for MMP0224 - glutamate-1-semialdehyde aminotransferase (NCBI)

GO Terms: GO:0033014, GO:0008483, GO:0030170, GO:0042286

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0224

Tuberculist Genomic Region

MMP1364 RNA polymerase, A/beta'/A' subunit (NCBI)

Details for MMP1364 - RNA polymerase, A/beta'/A' subunit (NCBI)

GO Terms: GO:0006350, GO:0003902, GO:0003900, GO:0003677, GO:0003899, GO:0003901

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1364

Tuberculist Genomic Region

MMP0639 LSU ribosomal protein L23E (NCBI)

Details for MMP0639 - LSU ribosomal protein L23E (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0639

Tuberculist Genomic Region

MMP1371 SSU ribosomal protein S10 (NCBI)

Details for MMP1371 - SSU ribosomal protein S10 (NCBI)

GO Terms: GO:0006412, GO:0015935, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1371

Tuberculist Genomic Region

MMP0640 SSU ribosomal protein S28E (NCBI)

Details for MMP0640 - SSU ribosomal protein S28E (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0640

Tuberculist Genomic Region

MMP1432 Adenylosuccinate synthase (NCBI)

Details for MMP1432 - Adenylosuccinate synthase (NCBI)

GO Terms: GO:0006164, GO:0004019, GO:0005525

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1432

Tuberculist Genomic Region

MMP0641 Ribosomal protein L7AE:Ribosomal protein L7Ae/L30e/S12e/Gadd45 (NCBI)

Details for MMP0641 - Ribosomal protein L7AE:Ribosomal protein L7Ae/L30e/S12e/Gadd45 (NCBI)

GO Terms: GO:0006412, GO:0042254, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0641

Tuberculist Genomic Region

MMP1658 SSU ribosomal protein S8E (NCBI)

Details for MMP1658 - SSU ribosomal protein S8E (NCBI)

GO Terms: GO:0005622

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1658

Tuberculist Genomic Region

Displaying 1 - 14 of 14

Motifs

Motif 1: e-value: 19 e-value: 1900

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

MMP0052

Conserved Hypothetical protein with 2 CBS domains (NCBI)

MMP0257

TATA-binding protein (TBP) (NCBI)
 down-regulates -0.33

MMP0052

MMP0257

MMP0052

Conserved Hypothetical protein with 2 CBS domains (NCBI)
 down-regulates -0.33

MMP0052

MMP0568

transcriptional regulator related protein (NCBI)
 up-regulates 0.26

MMP0568

MMP0460

Conserved Hypothetical Protein (NCBI)
 down-regulates -0.14

MMP0460

GO Enrichment

Category: BP
Category GO ID GO Term Annotated Expected Significant p-value
BP GO:0006167 AMP biosynthetic process 3 0.03 1 0.0310
BP GO:0046033 AMP metabolic process 3 0.03 1 0.0310
BP GO:0090305 nucleic acid phosphodiester bond hydroly... 4 0.04 1 0.0410
BP GO:0090501 RNA phosphodiester bond hydrolysis 4 0.04 1 0.0410
Category: CC
Category GO ID GO Term Annotated Expected Significant p-value
CC GO:0005737 cytoplasm 67 1.85 5 0.0063
CC GO:0044424 intracellular part 71 1.96 5 0.0085
CC GO:0005622 intracellular 76 2.10 5 0.0121
CC GO:0005623 cell 85 2.35 5 0.0214
CC GO:0044464 cell part 85 2.35 5 0.0214
CC GO:0005840 ribosome 32 0.88 3 0.0393
CC GO:0043226 organelle 32 0.88 3 0.0393
CC GO:0043228 non-membrane-bounded organelle 32 0.88 3 0.0393
CC GO:0043229 intracellular organelle 32 0.88 3 0.0393
CC GO:0043232 intracellular non-membrane-bounded organ... 32 0.88 3 0.0393
CC GO:0044444 cytoplasmic part 34 0.94 3 0.0466
Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0003677 DNA binding 56 0.43 3 0.0062
MF GO:0003676 nucleic acid binding 122 0.95 4 0.0069

Comments

Log in to post comments