Methanococcus maripaludis S2 Module 145 Residual: 0.24

×

Error message

  • Unable to create CTools CSS cache directory. Check the permissions on your files directory.
  • Unable to create CTools CSS cache directory. Check the permissions on your files directory.

Summary

Residual: 0.24 Score: -23.3264 version: mmp_cmonkey_11_Oct_11

Members

MMP0231 conserved hypothetical protein (NCBI)

Details for MMP0231 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0231

Tuberculist Genomic Region

MMP0549 conserved hypothetical protein (NCBI)

Details for MMP0549 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0549

Tuberculist Genomic Region

MMP0676 Intermediate filament protein:ATP/GTP-binding site motif A (P-loop):AAA ATPase (NCBI)

Details for MMP0676 - Intermediate filament protein:ATP/GTP-binding site motif A (P-loop):AAA ATPase (NCBI)

GO Terms: GO:0017111, GO:0000166, GO:0005198, GO:0005524

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0676

Tuberculist Genomic Region

MMP0642 conserved hypothetical archaeal protein (NCBI)

Details for MMP0642 - conserved hypothetical archaeal protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0642

Tuberculist Genomic Region

MMP1233 TonB-dependent receptor protein:Formate dehydrogenase, subunit FdhD (NCBI)

Details for MMP1233 - TonB-dependent receptor protein:Formate dehydrogenase, subunit FdhD (NCBI)

GO Terms: GO:0006118, GO:0009326, GO:0008863

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1233

Tuberculist Genomic Region

MMP0677 conserved hypothetical protein (NCBI)

Details for MMP0677 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0677

Tuberculist Genomic Region

MMP1580 Dihydropteroate synthase, DHPS:Dihydropteroate synthase-related protein synthase-related protein (NCBI)

Details for MMP1580 - Dihydropteroate synthase, DHPS:Dihydropteroate synthase-related protein synthase-related protein (NCBI)

GO Terms: GO:0009396, GO:0004156

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1580

Tuberculist Genomic Region

MMP0755 ATP/GTP-binding site motif A (P-loop) (NCBI)

Details for MMP0755 - ATP/GTP-binding site motif A (P-loop) (NCBI)

GO Terms: GO:0005524, GO:0016887

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0755

Tuberculist Genomic Region

MMP0117 conserved hypothetical protein (NCBI)

Details for MMP0117 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0117

Tuberculist Genomic Region

MMP1145 Septum formation inhibitor-activating ATPase (NCBI)

Details for MMP1145 - Septum formation inhibitor-activating ATPase (NCBI)

GO Terms: GO:0009236, GO:0006118, GO:0042242, GO:0016491

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1145

Tuberculist Genomic Region

MMP0431 Rhodopsin-like GPCR superfamily:Beta-lactamase-like (NCBI)

Details for MMP0431 - Rhodopsin-like GPCR superfamily:Beta-lactamase-like (NCBI)

GO Terms: GO:0007186, GO:0016021, GO:0016787, GO:0001584

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0431

Tuberculist Genomic Region

MMP1250 6-pyruvoyl tetrahydropterin synthase (NCBI)

Details for MMP1250 - 6-pyruvoyl tetrahydropterin synthase (NCBI)

GO Terms: GO:0003874

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1250

Tuberculist Genomic Region

MMP0432 conserved hypothetical protein (NCBI)

Details for MMP0432 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0432

Tuberculist Genomic Region

MMP1251 Conserved Hypothetical Protein with 2 CBS domains. (NCBI)

Details for MMP1251 - Conserved Hypothetical Protein with 2 CBS domains. (NCBI)

GO Terms: GO:0008152, GO:0003824

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1251

Tuberculist Genomic Region

MMP0433 putative flavodoxin (NCBI)

Details for MMP0433 - putative flavodoxin (NCBI)

GO Terms: GO:0010181, GO:0016491

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0433

Tuberculist Genomic Region

MMP1252 CBS domain (NCBI)

Details for MMP1252 - CBS domain (NCBI)

GO Terms: GO:0008152, GO:0003824

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1252

Tuberculist Genomic Region

MMP0548 Imidazoleglycerol-phosphate dehydratase (NCBI)

Details for MMP0548 - Imidazoleglycerol-phosphate dehydratase (NCBI)

GO Terms: GO:0000105, GO:0004424

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0548

Tuberculist Genomic Region

MMP1548 Fe-S type hydro-lyases tartrate/fumarate beta region (NCBI)

Details for MMP1548 - Fe-S type hydro-lyases tartrate/fumarate beta region (NCBI)

GO Terms: GO:0004333

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1548

Tuberculist Genomic Region

Displaying 1 - 18 of 18

Motifs

Motif 1: e-value: 0.1 e-value: 1000

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

MMP0031

conserved hypothetical archeal protein (NCBI)

MMP1646

conserved hypothetical archaeal protein (NCBI)
 down-regulates -0.43

MMP0031

MMP1646

MMP0032

ArsR family member (NCBI)

MMP0257

TATA-binding protein (TBP) (NCBI)
 up-regulates 0.19

MMP0032

MMP0257

MMP0257

TATA-binding protein (TBP) (NCBI)

MMP1447

Cro repressor family Helix-turn-helix motif containing protein (NCBI)
 up-regulates 0.16

MMP0257

MMP1447

MMP0499

conserved hypothetical protein (NCBI)

MMP1015

Transcription factor CBF/NF-Y/archaeal histone:Histone-fold/TFIID-TAF/NF-Y domain (NCBI)
 up-regulates 0.14

MMP0499

MMP1015

MMP0033

LysR family member (NCBI)
 down-regulates -0.13

MMP0033

GO Enrichment

Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0008863 formate dehydrogenase (NAD+) activity 3 0.03 1 0.0270
MF GO:0016888 endodeoxyribonuclease activity, producin... 3 0.03 1 0.0270
MF GO:0004520 endodeoxyribonuclease activity 4 0.04 1 0.0360
MF GO:0004536 deoxyribonuclease activity 4 0.04 1 0.0360
MF GO:0016620 oxidoreductase activity, acting on the a... 5 0.05 1 0.0450
MF GO:0016893 endonuclease activity, active with eithe... 5 0.05 1 0.0450

Comments

Log in to post comments