Organism : Bacillus cereus ATCC14579 | Module List :
Regulation information for BC0924(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for BC0924
|Gene||Common Name||Description||Module membership|
|BC0222||BC0222||Periplasmic molybdate-binding protein (NCBI ptt file)||85, 395|
|BC0358||BC0358||Quaternary ammonium compound-resistance protein (NCBI ptt file)||72, 85|
|BC0399||BC0399||Oxidoreductase (NCBI ptt file)||30, 85|
|BC0461||BC0461||General stress protein 26 (NCBI ptt file)||160, 364|
|BC0494||BC0494||hypothetical Cytosolic Protein (NCBI ptt file)||85, 139|
|BC0563||BC0563||Biotin carboxyl carrier protein (NCBI ptt file)||9, 85|
|BC0675||BC0675||hypothetical protein (NCBI ptt file)||85, 138|
|BC0771||BC0771||Protein erfK/srfK precursor (NCBI ptt file)||9, 85|
|BC0881||BC0881||Sensor protein comP (NCBI ptt file)||10, 85|
|BC0882||BC0882||Two-component response regulator comA (NCBI ptt file)||85, 453|
|BC0899||BC0899||hypothetical protein (NCBI ptt file)||85, 279|
|BC0923||BC0923||hypothetical protein (NCBI ptt file)||56, 85|
|BC0924||BC0924||hypothetical protein (NCBI ptt file)||85, 160|
|BC0928||BC0928||hypothetical protein (NCBI ptt file)||132, 160|
|BC0929||BC0929||hypothetical protein (NCBI ptt file)||85, 279|
|BC0934||BC0934||hypothetical protein (NCBI ptt file)||9, 85|
|BC0944||BC0944||hypothetical protein (NCBI ptt file)||85, 279|
|BC0945||BC0945||DNA integration/recombination/invertion protein (NCBI ptt file)||85, 212|
|BC0950||BC0950||Transcriptional regulator, copG family (NCBI ptt file)||85, 146|
|BC0963||BC0963||hypothetical protein (NCBI ptt file)||160, 454|
|BC0985||BC0985||hypothetical protein (NCBI ptt file)||85, 238|
|BC1073||BC1073||hypothetical protein (NCBI ptt file)||85, 163|
|BC1109||BC1109||hypothetical protein (NCBI ptt file)||85, 404|
|BC1623||BC1623||Hfq protein (NCBI ptt file)||85, 97|
|BC1656||BC1656||Flagellin (NCBI ptt file)||30, 85|
|BC1660||BC1660||Soluble lytic murein transglycosylase (NCBI ptt file)||85, 424|
|BC1791||BC1791||Acetyltransferase (NCBI ptt file)||160, 413|
|BC1792||BC1792||hypothetical protein (NCBI ptt file)||160, 413|
|BC1848||BC1848||Prophage helix-turn-helix protein (NCBI ptt file)||9, 85|
|BC1935||BC1935||hypothetical protein (NCBI ptt file)||9, 85|
|BC2253||BC2253||hypothetical Cytosolic Protein (NCBI ptt file)||85, 154|
|BC2274||BC2274||hypothetical protein (NCBI ptt file)||160, 454|
|BC2362||BC2362||Transcriptional regulators, LysR family (NCBI ptt file)||30, 85|
|BC2379||BC2379||Transcriptional regulator (NCBI ptt file)||9, 85|
|BC2465||BC2465||hypothetical protein (NCBI ptt file)||85, 217|
|BC2470||BC2470||ECF-type sigma factor negative effector (NCBI ptt file)||85, 293|
|BC2474||BC2474||Ribosomal-protein-serine acetyltransferase (NCBI ptt file)||85, 248|
|BC2495||BC2495||hypothetical protein (NCBI ptt file)||85, 141|
|BC2511||BC2511||hypothetical protein (NCBI ptt file)||160, 395|
|BC2525||BC2525||hypothetical protein (NCBI ptt file)||160, 324|
|BC2552||BC2552||hypothetical protein (NCBI ptt file)||85, 171|
|BC2570||BC2570||Collagen triple helix repeat protein (NCBI ptt file)||85, 125|
|BC2622||BC2622||Macrolide glycosyltransferase (NCBI ptt file)||85, 250|
|BC2774||BC2774||hypothetical protein (NCBI ptt file)||97, 160|
|BC2819||BC2819||hypothetical protein (NCBI ptt file)||85, 489|
|BC2884||BC2884||Oligopeptide-binding protein oppA (NCBI ptt file)||160, 413|
|BC2961||BC2961||Sugar transport system permease protein (NCBI ptt file)||85, 158|
|BC3097||BC3097||Spore germination protein QC (NCBI ptt file)||24, 85|
|BC3138||BC3138||hypothetical protein (NCBI ptt file)||85, 364|
|BC3232||BC3232||hypothetical protein (NCBI ptt file)||85, 364|
|BC3238||BC3238||hypothetical protein (NCBI ptt file)||85, 364|
|BC3350||BC3350||TPR-repeat-containing protein (NCBI ptt file)||160, 454|
|BC3434||BC3434||Transcriptional regulator, DeoR family (NCBI ptt file)||9, 85|
|BC3441||BC3441||Lysozyme M1 precursor (NCBI ptt file)||101, 160|
|BC3689||BC3689||Site-specific recombinase (NCBI ptt file)||85, 415|
|BC3714||BC3714||tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI ptt file)||85, 308|
|BC3989||BC3989||Diguanylate cyclase/phosphodiesterase domain 2 (EAL) (NCBI ptt file)||72, 85|
|BC4244||BC4244||hypothetical protein (NCBI ptt file)||34, 160|
|BC5403||BC5403||Integral membrane protein (NCBI ptt file)||85, 158|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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