Organism : Bacillus cereus ATCC14579 | Module List :
Regulation information for BC3446(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for BC3446
|Gene||Common Name||Description||Module membership|
|BC0171||BC0171||Chitooligosaccharide deacetylase (NCBI ptt file)||158, 428|
|BC0372||BC0372||hypothetical protein (NCBI ptt file)||249, 453|
|BC0629||BC0629||Arginine/ornithine antiporter (NCBI ptt file)||134, 428|
|BC0687||BC0687||IG hypothetical 22578 (NCBI ptt file)||453, 509|
|BC0882||BC0882||Two-component response regulator comA (NCBI ptt file)||85, 453|
|BC0932||BC0932||hypothetical protein (NCBI ptt file)||256, 453|
|BC1065||BC1065||hypothetical Membrane Spanning Protein (NCBI ptt file)||30, 453|
|BC1124||BC1124||Methyl-accepting chemotaxis protein (NCBI ptt file)||428, 489|
|BC1254||BC1254||hypothetical protein (NCBI ptt file)||9, 428|
|BC1265||BC1265||hypothetical Cytosolic Protein (NCBI ptt file)||453, 509|
|BC1363||BC1363||Leucine-responsive regulatory protein (NCBI ptt file)||204, 428|
|BC1577||BC1577||hypothetical protein (NCBI ptt file)||428, 481|
|BC1654||BC1654||Chemotaxis protein cheV (NCBI ptt file)||157, 428|
|BC1676||BC1676||hypothetical protein (NCBI ptt file)||312, 428|
|BC1677||BC1677||Dienelactone hydrolase family (NCBI ptt file)||141, 428|
|BC1752||BC1752||Phosphohydrolase (MutT/nudix family protein) (NCBI ptt file)||214, 428|
|BC1767||BC1767||Sodium-dependent serine transporter (NCBI ptt file)||412, 428|
|BC1943||BC1943||Glycosyltransferase (NCBI ptt file)||239, 453|
|BC1999||BC1999||IolS protein (NCBI ptt file)||108, 453|
|BC2059||BC2059||Phosphoglycerate mutase (NCBI ptt file)||62, 428|
|BC2060||BC2060||hydrolase (HAD superfamily) (NCBI ptt file)||62, 428|
|BC2061||BC2061||Multidrug resistance protein B (NCBI ptt file)||256, 428|
|BC2090||BC2090||hypothetical protein (NCBI ptt file)||254, 453|
|BC2330||BC2330||Zn-dependent hydrolase (NCBI ptt file)||453, 460|
|BC2348||BC2348||Acetyltransferase (NCBI ptt file)||163, 453|
|BC2363||BC2363||Aspartate-semialdehyde dehydrogenase (NCBI ptt file)||123, 453|
|BC2407||BC2407||hypothetical protein (NCBI ptt file)||286, 453|
|BC2430||BC2430||Methyltransferase (NCBI ptt file)||217, 453|
|BC2526||BC2526||Transcriptional regulator, GntR family (NCBI ptt file)||30, 428|
|BC2742||BC2742||Transcriptional regulator, GntR family (NCBI ptt file)||9, 453|
|BC2810||BC2810||hypothetical protein (NCBI ptt file)||321, 453|
|BC2915||BC2915||hypothetical protein (NCBI ptt file)||55, 453|
|BC2923||BC2923||Acetyltransferase (NCBI ptt file)||193, 453|
|BC3014||BC3014||hypothetical protein (NCBI ptt file)||72, 453|
|BC3029||BC3029||hypothetical protein (NCBI ptt file)||209, 453|
|BC3121||BC3121||5'-nucleotidase (NCBI ptt file)||214, 428|
|BC3146||BC3146||Peptidoglycan N-acetylglucosamine deacetylase (NCBI ptt file)||9, 428|
|BC3150||BC3150||Transcriptional regulator, AraC family (NCBI ptt file)||359, 453|
|BC3170||BC3170||Transposase (NCBI ptt file)||453, 461|
|BC3175||BC3175||Leucine-responsive regulatory protein (NCBI ptt file)||364, 428|
|BC3210||BC3210||hypothetical Cytosolic Protein (NCBI ptt file)||312, 428|
|BC3216||BC3216||1-aminocyclopropane-1-carboxylate deaminase (NCBI ptt file)||72, 453|
|BC3322||BC3322||hypothetical protein (NCBI ptt file)||197, 453|
|BC3366||BC3366||oxetanocin A resistance protein (NCBI ptt file)||254, 453|
|BC3446||BC3446||hypothetical protein (NCBI ptt file)||428, 453|
|BC3457||BC3457||hypothetical protein (NCBI ptt file)||62, 453|
|BC3506||BC3506||Ribosomal-protein-alanine acetyltransferase (NCBI ptt file)||246, 428|
|BC3507||BC3507||hypothetical protein (NCBI ptt file)||428, 481|
|BC3639||BC3639||hypothetical Membrane Spanning Protein (NCBI ptt file)||214, 428|
|BC3687||BC3687||2',3'-cyclic-nucleotide 2'-phosphodiesterase (NCBI ptt file)||209, 453|
|BC3919||BC3919||hypothetical Membrane Spanning Protein (NCBI ptt file)||288, 453|
|BC4216||BC4216||hypothetical protein (NCBI ptt file)||341, 428|
|BC4352||BC4352||Phenylalanine-4-hydroxylase (NCBI ptt file)||158, 428|
|BC4812||BC4812||Cell surface protein (NCBI ptt file)||158, 428|
|BC4818||BC4818||hypothetical protein (NCBI ptt file)||246, 453|
|BC4839||BC4839||ABC transporter ATP-binding protein (NCBI ptt file)||63, 453|
|BC5031||BC5031||Methionyl-tRNA synthetase (NCBI ptt file)||408, 453|
|BC5428||BC5428||hypothetical protein (NCBI ptt file)||341, 428|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Regulation tab for each gene includes regulatory influences such as environmental factors or transcription factors or their combinations identified by regulatory network inference algorithms.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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