Organism : Bacillus cereus ATCC14579 | Module List :
Regulation information for BC3459(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for BC3459
|Gene||Common Name||Description||Module membership|
|BC0390||BC0390||Spore coat protein B (NCBI ptt file)||56, 255|
|BC0638||BC0638||Sodium/proton-dependent alanine carrier protein (NCBI ptt file)||339, 407|
|BC0922||BC0922||hypothetical protein (NCBI ptt file)||56, 398|
|BC0923||BC0923||hypothetical protein (NCBI ptt file)||56, 85|
|BC0964||BC0964||Ribosomal-protein-alanine acetyltransferase (NCBI ptt file)||280, 407|
|BC1112||BC1112||Metal-dependent phosphohydrolase (NCBI ptt file)||56, 407|
|BC1142||BC1142||Spore germination protein PD (NCBI ptt file)||351, 407|
|BC1144||BC1144||Spore germination protein PB (NCBI ptt file)||56, 263|
|BC1170||BC1170||putative hydrolase (NCBI ptt file)||76, 407|
|BC1264||BC1264||hypothetical protein (NCBI ptt file)||56, 220|
|BC1407||BC1407||Imidazoleglycerol-phosphate dehydratase (NCBI ptt file)||301, 407|
|BC1413||BC1413||histidinol-phosphatase (RefSeq)||301, 407|
|BC1529||BC1529||DNA polymerase, bacteriophage-type (NCBI ptt file)||407, 446|
|BC1537||BC1537||Biotin operon repressor / Biotin--[acetyl-CoA-carboxylase] synthetase (NCBI ptt file)||359, 407|
|BC1568||BC1568||Methionine aminopeptidase (NCBI ptt file)||217, 407|
|BC2189||BC2189||Aminoglycoside phosphotransferase (NCBI ptt file)||209, 407|
|BC2371||BC2371||Multidrug resistance ABC transporter ATP-binding and permease protein (NCBI ptt file)||56, 511|
|BC2372||BC2372||Multidrug resistance ABC transporter ATP-binding and permease protein (NCBI ptt file)||56, 306|
|BC2414||BC2414||Phage protein (NCBI ptt file)||150, 407|
|BC2510||BC2510||Collagen adhesion protein (NCBI ptt file)||104, 407|
|BC2532||BC2532||Methyltransferase (NCBI ptt file)||56, 427|
|BC2602||BC2602||hypothetical protein (NCBI ptt file)||154, 407|
|BC2610||BC2610||Macrolide-efflux protein (NCBI ptt file)||56, 255|
|BC2611||BC2611||Virginiamycin A acetyltransferase (NCBI ptt file)||56, 238|
|BC2777||BC2777||Dihydrolipoamide acetyltransferase component of acetoin dehydrogenase complex (NCBI ptt file)||355, 407|
|BC3164||BC3164||Xanthine dehydrogenase (molybdopterin-guanine dinucleotide biosynthesis subunit) (NCBI ptt file)||347, 407|
|BC3165||BC3165||Xanthine dehydrogenase subunit (NCBI ptt file)||347, 407|
|BC3166||BC3166||Xanthine dehydrogenase iron-sulfur subunit (NCBI ptt file)||407, 484|
|BC3178||BC3178||Lactoylglutathione lyase (NCBI ptt file)||287, 407|
|BC3190||BC3190||Transcriptional regulators, LysR family (NCBI ptt file)||56, 407|
|BC3233||BC3233||Glucose/mannose transporter (NCBI ptt file)||347, 407|
|BC3253||BC3253||Transcriptional regulator, AraC family (NCBI ptt file)||407, 427|
|BC3458||BC3458||XpaF1 protein (NCBI ptt file)||56, 123|
|BC3459||BC3459||hypothetical protein (NCBI ptt file)||56, 407|
|BC3476||BC3476||Transcriptional regulators, LysR family (NCBI ptt file)||72, 407|
|BC3532||BC3532||Glyoxalase family protein (NCBI ptt file)||359, 407|
|BC3638||BC3638||Serine/threonine protein phosphatase (NCBI ptt file)||377, 407|
|BC3646||BC3646||Ferredoxin-dependent glutamate synthase (NCBI ptt file)||358, 407|
|BC3800||BC3800||Dipicolinate synthase, B chain (NCBI ptt file)||393, 407|
|BC3801||BC3801||Dipicolinate synthase, A chain (NCBI ptt file)||76, 407|
|BC3857||BC3857||Thiamin pyrophosphokinase (NCBI ptt file)||347, 407|
|BC3936||BC3936||hypothetical Cytosolic Protein (NCBI ptt file)||56, 402|
|BC3988||BC3988||hypothetical protein (NCBI ptt file)||56, 293|
|BC4271||BC4271||Transporter, MFS superfamily (NCBI ptt file)||56, 59|
|BC4399||BC4399||hypothetical protein (NCBI ptt file)||56, 351|
|BC4606||BC4606||hypothetical Membrane Spanning Protein (NCBI ptt file)||84, 407|
|BC4643||BC4643||Metal-dependent hydrolase (NCBI ptt file)||407, 427|
|BC4701||BC4701||2'-5' RNA ligase (NCBI ptt file)||359, 407|
|BC5029||BC5029||Sensor protein vanSB (NCBI ptt file)||56, 415|
|BC5103||BC5103||Ferric anguibactin transport ATP-binding protein (NCBI ptt file)||56, 306|
|BC5104||BC5104||Ferric anguibactin transport system permease protein fatC (NCBI ptt file)||56, 306|
|BC5105||BC5105||Ferric anguibactin transport system permease protein fatD (NCBI ptt file)||56, 306|
|BC5106||BC5106||Ferric anguibactin-binding protein (NCBI ptt file)||56, 306|
|BC5178||BC5178||Pristinamycin resistance protein VgaB (NCBI ptt file)||56, 281|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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