Organism : Clostridium acetobutylicum | Module List :
Aspartate ammonia-lyase (aspartase) gene ansB(aspA) (NCBI ptt file)
Functional Annotations (4)
|Aspartate ammonia-lyase||cog/ cog|
|fumarate metabolic process||go/ biological_process|
|aspartate ammonia-lyase activity||go/ molecular_function|
|tricarboxylic acid cycle enzyme complex||go/ cellular_component|
Regulation information for CAC0274(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for CAC0274
Module neighborhood information for CAC0274
|Gene||Common Name||Description||Module membership|
|CAC0087||CAC0087||Predicted Co/Zn/Cd cation transporter (NCBI ptt file)||182, 206|
|CAC0274||ansB||Aspartate ammonia-lyase (aspartase) gene ansB(aspA) (NCBI ptt file)||206, 238|
|CAC0315||CAC0315||Predicted acetyltransferase (NCBI ptt file)||11, 206|
|CAC0321||CAC0321||Response regulator (CheY-like domain, HTH domain) (NCBI ptt file)||182, 206|
|CAC0556||CAC0556||Uncharacterised conserved protein (NCBI ptt file)||34, 238|
|CAC0558||CAC0558||Hypothetical protein (NCBI ptt file)||201, 206|
|CAC0690||CAC0690||Endoglucanase, aminopeptidase M42 family (NCBI ptt file)||216, 238|
|CAC0693||CAC0693||Transcriptional regulator of the LacI family (NCBI ptt file)||176, 238|
|CAC0856||CAC0856||Transcriptional regulator, LacI family (probably maltose operon transcriptional repressor) (NCBI ptt file)||72, 206|
|CAC0860||CAC0860||Two-component response regulator (NCBI ptt file)||185, 206|
|CAC0875||CAC0875||Predicted permease (NCBI ptt file)||206, 253|
|CAC0900||CAC0900||Possible Zn-finger containing protein (NCBI ptt file)||72, 206|
|CAC0920||CAC0920||Protein related to MIFH/DOPD protein family, function in bacteria is unknown (NCBI ptt file)||72, 206|
|CAC1037||CAC1037||Predicted xylanase/chitin deacetylase (NCBI ptt file)||206, 261|
|CAC1047||CAC1047||Ribonucleotide reductase, vitamin B12-dependent (NCBI ptt file)||231, 238|
|CAC1172||CAC1172||Predicted integrase of XerC/XerD family, diverged (NCBI ptt file)||151, 238|
|CAC1249||minD||Septum site-determining protein MinD, ATPase (NCBI ptt file)||206, 244|
|CAC1262||CAC1262||Predicted nucleotidyltransferases of NarD/TagD family (N-term. domain) , yqeJ ortholog (NCBI ptt file)||31, 238|
|CAC1554||CAC1554||Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein (NCBI ptt file)||176, 206|
|CAC1626||CAC1626||Glycerol dehydrogenase (NCBI ptt file)||222, 238|
|CAC1648||CAC1648||Hypothetical protein, CF-7 family (NCBI ptt file)||206, 240|
|CAC1666||CAC1666||Predicted membrane protein (NCBI ptt file)||113, 238|
|CAC1669||CstA||Carbon starvation protein (NCBI ptt file)||209, 238|
|CAC1856||CAC1856||Ribonuclease HI (NCBI ptt file)||238, 267|
|CAC1943||CAC1943||Hypothetical protein (NCBI ptt file)||238, 348|
|CAC2019||CAC2019||Malonyl CoA-acyl carrier protein transacylase (NCBI ptt file)||166, 238|
|CAC2064||deoD||Purine nucleoside phosphorylase (NCBI ptt file)||182, 238|
|CAC2200||CAC2200||Uncharacterized conserved protein (NCBI ptt file)||238, 299|
|CAC2201||CAC2201||Hypothetical protein (NCBI ptt file)||238, 348|
|CAC2688||CAC2688||Alpha/beta superfamily hydrolase (possible chloroperoxidase) (NCBI ptt file)||67, 238|
|CAC2742||CAC2742||Predicted membrane protein (NCBI ptt file)||206, 240|
|CAC2967||CAC2967||Alpha-acetolactate decarboxylase (NCBI ptt file)||152, 206|
|CAC2979||aspS||Aspartyl-tRNA synthetase (NCBI ptt file)||37, 238|
|CAC2993||CAC2993||Uncharacterized protein, YceG B.subtilis homolog (NCBI ptt file)||146, 206|
|CAC3022||CAC3022||Alpha/beta superfamily hydrolase (NCBI ptt file)||146, 206|
|CAC3028||CAC3028||Conserved membrane protein, possible homolog of CAAX-like membrane endopeptidase (NCBI ptt file)||31, 206|
|CAC3062||CAC3062||CPSB/CAPC ortholog, PHP family hydrolase (NCBI ptt file)||238, 251|
|CAC3063||CAC3063||Transcriptional regulator, LytR family (NCBI ptt file)||238, 365|
|CAC3074||CAC3074||Uncharacterized conserved protein (NCBI ptt file)||72, 206|
|CAC3354||CAC3354||Probable cation efflux pump (multidrug resistance protein) (NCBI ptt file)||206, 266|
|CAC3373||CAC3373||Pectin methylesterase (NCBI ptt file)||206, 314|
|CAC3464||CAC3464||Uncharacterized conserved protein (fragment) (NCBI ptt file)||182, 206|
|CAC3484||CAC3484||Short-chain alcohol dehydrogenase family protein (NCBI ptt file)||206, 216|
|CAC3485||CAC3485||Transcriptional regulator, MarR/EmrR family (NCBI ptt file)||206, 313|
|CAC3502||CAC3502||Transcriptional regulator, fadR family (NCBI ptt file)||57, 206|
|CAC3568||accA||Acetyl-CoA carboxylase alpha subunit (NCBI ptt file)||32, 206|
|CAC3589||CAC3589||Uncharacterized conserved membrane protein, YHGE B.subtilis ortholog (NCBI ptt file)||238, 303|
|CAC3599||CAC3599||Hypothetical protein (NCBI ptt file)||4, 206|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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