Organism : Clostridium acetobutylicum | Module List :
Uncharacterized protein homolog YKRK B. subtilis (NCBI ptt file)
Functional Annotations (1)
|endopeptidase inhibitor activity||go/ molecular_function|
Regulation information for CAC0314(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for CAC0314
|endopeptidase inhibitor activity||go/ molecular_function|
Module neighborhood information for CAC0314
|Gene||Common Name||Description||Module membership|
|CAC0006||gyrB||DNA gyrase (topoisomerase II) B subunit (NCBI ptt file)||57, 64|
|CAC0168||CAC0168||T-RNA-processing ribonuclease BN (NCBI ptt file)||82, 207|
|CAC0204||srta||Sortase (surface protein transpeptidase), YHCS B.subtilis ortholog (NCBI ptt file)||115, 207|
|CAC0222||exoA||Exodeoxyribonuclease (exoA) (NCBI ptt file)||72, 207|
|CAC0225||CAC0225||Sensory transduction histidine kinase (NCBI ptt file)||57, 109|
|CAC0250||CAC0250||Methyl-accepting chemotaxis protein (NCBI ptt file)||207, 258|
|CAC0314||CAC0314||Uncharacterized protein homolog YKRK B. subtilis (NCBI ptt file)||57, 207|
|CAC0345||CAC0345||Hypothetical protein (NCBI ptt file)||207, 361|
|CAC0357||CAC0357||Permease of the Na:galactoside symporter family (NCBI ptt file)||207, 361|
|CAC0358||CAC0358||Predicted xylanase/chitin deacetylase (NCBI ptt file)||165, 207|
|CAC0431||CAC0431||Hypothetical protein, YitT family (NCBI ptt file)||169, 207|
|CAC0440||CAC0440||Homolog of osmotically induced OSMY protein of E.coli (NCBI ptt file)||62, 207|
|CAC0463||CAC0463||Serine protease Do (heat-shock protein) (NCBI ptt file)||207, 223|
|CAC0543||CAC0543||Methyl-accepting chemotaxis protein (NCBI ptt file)||207, 361|
|CAC0604||CAC0604||Acyl carrier protein phosphodiesterase (NCBI ptt file)||57, 279|
|CAC0628||CAC0628||Putative Mn transporter, NRAMR family (NCBI ptt file)||191, 207|
|CAC0805||CAC0805||Methyl-accepting chemotaxis protein (NCBI ptt file)||24, 207|
|CAC0833||CAC0833||ABC-type multidrug transport system (daunorubicin resistance), ATPase component (NCBI ptt file)||115, 207|
|CAC0835||CAC0835||Predicted integral membrane protein (NCBI ptt file)||115, 207|
|CAC0886||CAC0886||Hypothetical protein (NCBI ptt file)||207, 270|
|CAC1418||CAC1418||Nitroreductase family protein (NCBI ptt file)||57, 272|
|CAC1422||CAC1422||Uncharacterized CBS domain-containing protein, YUGS B.subtilis ortholog (NCBI ptt file)||207, 361|
|CAC1857||CAC1857||Predicted metal-dependent peptidase (NCBI ptt file)||57, 64|
|CAC1859||CAC1859||Hypothetical protein (NCBI ptt file)||57, 64|
|CAC1955||CAC1955||Hypothetical protein (NCBI ptt file)||57, 109|
|CAC1973||CAC1973||Hypothetical secreted protein (NCBI ptt file)||57, 322|
|CAC2057||CAC2057||D-alanyl-D-alanine carboxypeptidase (NCBI ptt file)||102, 207|
|CAC2063||dacF||D-alanyl-D-alanine carboxypeptidase (NCBI ptt file)||57, 64|
|CAC2141||CAC2141||Hypothetical protein (NCBI ptt file)||57, 273|
|CAC2310||CAC2310||Methenyl tetrahydrofolate cyclohydrolase (serine cycle enzyme) (NCBI ptt file)||57, 294|
|CAC2474||def||N-formylmethionyl-tRNA deformylase (NCBI ptt file)||57, 272|
|CAC2540||CAC2540||Co/Zn/Cd efflux system component (NCBI ptt file)||207, 301|
|CAC2814||CAC2814||Predicted membrane protein (NCBI ptt file)||153, 207|
|CAC2949||CAC2949||Predicted permease (NCBI ptt file)||207, 309|
|CAC2950||lacR||Lactose phosphotransferase system repressor lacR (NCBI ptt file)||57, 146|
|CAC2987||CAC2987||Primase-like protein, containing TOPRIM domain, YABF B.subtilis ortholog (NCBI ptt file)||57, 273|
|CAC3072||CAC3072||Mannose-1-phosphate guanylyltransferase (NCBI ptt file)||57, 286|
|CAC3347||CAC3347||Amino acid transporter, permease (NCBI ptt file)||207, 276|
|CAC3395||CAC3395||Predicted membrane protein (NCBI ptt file)||57, 86|
|CAC3396||CAC3396||Nudix (MutT) family hydrolase, C4-type Zn-finger domain containing (NCBI ptt file)||57, 322|
|CAC3468||uvrC||Excinuclease ABC, subunit C (uvrC) (NCBI ptt file)||207, 301|
|CAC3478||CAC3478||Predicted membrane protein (NCBI ptt file)||207, 326|
|CAC3502||CAC3502||Transcriptional regulator, fadR family (NCBI ptt file)||57, 206|
|CAC3519||CAC3519||Predicted membrane protein, possible permease (NCBI ptt file)||158, 207|
|CAC3520||CAC3520||ABC-type transport system, ATPase component (NCBI ptt file)||158, 207|
|CAC3597||CAC3597||Rubrerythrin (NCBI ptt file)||4, 57|
|CAC3598||CAC3598||Rubrerythrin (NCBI ptt file)||4, 57|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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