Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC1624(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for CAC1624
Module neighborhood information for CAC1624
|Gene||Common Name||Description||Module membership|
|CAC0005||CAC0005||Uncharacterized small conserved protein, ortholog of YAAB B.subtilis (NCBI ptt file)||64, 298|
|CAC0006||gyrB||DNA gyrase (topoisomerase II) B subunit (NCBI ptt file)||57, 64|
|CAC0034||CAC0034||Hypothetical protein (NCBI ptt file)||63, 298|
|CAC0277||CAC0277||HD-GYP hydrolase domain containing protein (NCBI ptt file)||109, 298|
|CAC0296||csfB||Zn-finger containing protein, csfB B.subtilis homolog (NCBI ptt file)||64, 154|
|CAC0475||CAC0475||HD-GYP domain (NCBI ptt file)||107, 298|
|CAC0493||CAC0493||Uncharcterized small conserved protein, YhhG family (NCBI ptt file)||64, 232|
|CAC0514||CAC0514||CBS domain, similar to B.subtilis ytoI (NCBI ptt file)||64, 272|
|CAC0531||CAC0531||Transcriptional regulator, RpiR family (NCBI ptt file)||41, 64|
|CAC0637||tyrS||Tyrosyl-tRNA synthetase (NCBI ptt file)||10, 64|
|CAC0639||CAC0639||Flagellar biosynthesis related protein (NCBI ptt file)||53, 298|
|CAC0640||CAC0640||Predicted phoshohydrolase (NCBI ptt file)||282, 298|
|CAC0672||CAC0672||Fision threonyl-tRNA synthetase (N-terminal part) and uridine kinase (NCBI ptt file)||64, 273|
|CAC0673||CAC0673||L-serine dehydratase, beta chain (NCBI ptt file)||64, 273|
|CAC0904||CAC0904||ATPase with chaperon activity, two ATP-binding domains, ClpC orthologs (NCBI ptt file)||64, 298|
|CAC0957||CAC0957||Xre family DNA-binding domain and TPR-repeat-containing protein (NCBI ptt file)||298, 348|
|CAC1295||CAC1295||ERA GTPase (NCBI ptt file)||64, 84|
|CAC1302||CAC1302||Predicted SAM-dependent methyltransferase (NCBI ptt file)||10, 64|
|CAC1404||CAC1404||Transcriptional regulator of sugar metabolism (deoR family) (NCBI ptt file)||64, 109|
|CAC1414||CAC1414||TerE family protein, ortholog of stress responce protein SCP2 (YCEC) B.subtilis (NCBI ptt file)||272, 298|
|CAC1416||CAC1416||Predicted acetyltransferase (NCBI ptt file)||64, 298|
|CAC1485||CAC1485||Glycosyltransferase, involved in cell wall biogenesis (NCBI ptt file)||191, 298|
|CAC1579||CAC1579||Methyl-accepting chemotaxis-like protein (chemotaxis sensory transducer) (NCBI ptt file)||90, 298|
|CAC1604||CAC1604||Methylglyoxal synthase (NCBI ptt file)||47, 298|
|CAC1605||arbA||Ketopantoate reductase (NCBI ptt file)||26, 298|
|CAC1622||CAC1622||Pyridoxal kinase related protein (NCBI ptt file)||64, 261|
|CAC1623||CAC1623||Uncharacterized protein, ortholog of Thermotoga (4980645) (NCBI ptt file)||210, 298|
|CAC1624||CAC1624||Uncharacterized protein from DegV (B.subtilis) family (NCBI ptt file)||64, 298|
|CAC1679||CAC1679||Hypothetical protein (NCBI ptt file)||64, 128|
|CAC1796||CAC1796||Predicted membrane-associated Zn-dependent protease (NCBI ptt file)||64, 91|
|CAC1840||CAC1840||Predicted acetyltransferase domain containing protein (NCBI ptt file)||298, 334|
|CAC1849||CAC1849||Predicted flavoprotein, YhiN family (NCBI ptt file)||64, 272|
|CAC1850||CAC1850||Transcriptional regulators, RpiR family (NCBI ptt file)||64, 211|
|CAC1851||CAC1851||Predicted pseudouridylate synthase (NCBI ptt file)||64, 211|
|CAC1857||CAC1857||Predicted metal-dependent peptidase (NCBI ptt file)||57, 64|
|CAC1858||CAC1858||MoxR-like ATPase (NCBI ptt file)||64, 106|
|CAC1859||CAC1859||Hypothetical protein (NCBI ptt file)||57, 64|
|CAC2052||CAC2052||DNA-dependent RNA polymerase sigma subunit (NCBI ptt file)||41, 64|
|CAC2053||CAC2053||Hypothetical protein (NCBI ptt file)||41, 64|
|CAC2063||dacF||D-alanyl-D-alanine carboxypeptidase (NCBI ptt file)||57, 64|
|CAC2085||CAC2085||Uncharacterized protein from alkaline shock protein family, YQHY B.subtilis ortholog (NCBI ptt file)||64, 273|
|CAC2195||CAC2195||Protein containing aminopeptidase domain (NCBI ptt file)||298, 355|
|CAC2422||CAC2422||Oxygen-independent coproporphyrinogen III oxidase, Fe-S oxidoreductase (NCBI ptt file)||273, 298|
|CAC2665||CAC2665||Xanthosine triphosphate pyrophosphatase, HAM1-like protein (NCBI ptt file)||64, 281|
|CAC2677||CAC2677||Lytic murein transglycosylase (NCBI ptt file)||64, 298|
|CAC2714||CAC2714||ABC-type transporter, duplicate ATPase component (NCBI ptt file)||157, 298|
|CAC2726||CAC2726||Uncharacterized protein, possible ynzC B.subtilis homolog (NCBI ptt file)||159, 298|
|CAC2901||CAC2901||Predicted membrane protein (NCBI ptt file)||298, 351|
|CAC2904||CAC2904||Uncharacterized protein, VEG B.subtilis ortholog (NCBI ptt file)||233, 298|
|CAC3718||CAC3718||Exopolyphosphatase-like domain and PAS domain containing protein, YYBT B.subtilis ortholog (NCBI ptt file)||182, 298|
|CAC3719||CAC3719||Uncharacterized predicted membrane protein, YYBS B.subtilis homolog (NCBI ptt file)||182, 298|
|CAC3720||CAC3720||Hypothetical protein (NCBI ptt file)||273, 298|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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