Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC1726(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for CAC1726
Module neighborhood information for CAC1726
|Gene||Common Name||Description||Module membership|
|CAC0300||CAC0300||DNA-polymerase III, gamma subunit (NCBI ptt file)||315, 329|
|CAC1026||CAC1026||Superfamily I DNA helicase (NCBI ptt file)||213, 315|
|CAC1429||galE||UDP-glucose 4-epimerase (NCBI ptt file)||271, 329|
|CAC1652||aspA||Aspartate ammonia-lyase (NCBI ptt file)||109, 329|
|CAC1686||CAC1686||S-adenosylmethionine-dependent methyltransferase (NCBI ptt file)||315, 329|
|CAC1701||CAC1701||Sensory histidine kinase (with HAMP and PAS domains) (NCBI ptt file)||100, 329|
|CAC1711||CAC1711||Predicted GTPase (NCBI ptt file)||329, 350|
|CAC1718||CAC1718||Guanylate kinase, YLOD B.subtilis ortholog (NCBI ptt file)||3, 329|
|CAC1723||fmt||Methionyl-tRNA formyltransferase (NCBI ptt file)||159, 329|
|CAC1724||CAC1724||Predicted metal-dependent peptidase (NCBI ptt file)||159, 329|
|CAC1726||CAC1726||Predicted Fe-S-cluster redox enzyme, YLON B.subtilis ortholog (NCBI ptt file)||213, 329|
|CAC1728||CAC1728||Serine/threonine protein kinase, Pkn2 family (YLOP B.subtilis ortholog) (NCBI ptt file)||314, 329|
|CAC1729||CAC1729||Predicted GTPase (YLOQ B.subtilis ortholog) (NCBI ptt file)||213, 315|
|CAC1730||CAC1730||Pentose-5-phosphate-3-epimerase, YLOR B.subtilis ortholog (NCBI ptt file)||315, 329|
|CAC1734||CAC1734||Uncharacterized, alkaline shock induced protein (NCBI ptt file)||36, 329|
|CAC1751||smc||Chromosome segregation SMC protein, ATPase (NCBI ptt file)||213, 269|
|CAC1798||CAC1798||Uncharacterized protein, YhbC family (NCBI ptt file)||213, 310|
|CAC1799||nusA||Transcription terminator NusA (NCBI ptt file)||213, 310|
|CAC1800||CAC1800||Uncharacterized conserved protein, YLXR B.subtilis homolog (NCBI ptt file)||213, 310|
|CAC1801||CAC1801||Possibly nucleic acid binding protein similar to ribosomal protein HS6-type, YLXQ B.subtilis ortholog (NCBI ptt file)||213, 310|
|CAC1802||infB||Translation IF2, GTPase (NCBI ptt file)||14, 213|
|CAC1803||rfbA||Ribosome-binding factor A (NCBI ptt file)||213, 310|
|CAC1804||CAC1804||Exopolyphosphatase family protein (NCBI ptt file)||5, 213|
|CAC1805||truB||Pseudouridine synthase (NCBI ptt file)||213, 310|
|CAC1806||CAC1806||Riboflavin kinase/FAD synthase (NCBI ptt file)||5, 213|
|CAC1809||CAC1809||Uncharacterized conserved protein, YLMC B.subtilis ortholog (NCBI ptt file)||213, 274|
|CAC1810||dapG||Aspartokinase (NCBI ptt file)||213, 274|
|CAC2233||CAC2233||TRNA 5-methylaminomethyl-2-thiouridylate)-methyltransferase, PP-loop ATPase (NCBI ptt file)||329, 363|
|CAC2234||nifS||NifS family enzyme (cysteine desulfurase/cysteine sulfinate desulfinase) (NCBI ptt file)||51, 329|
|CAC2269||aspS||Aspartyl-tRNA synthetase (NCBI ptt file)||51, 329|
|CAC2572||CAC2572||Possible aminoglycoside phosphotransferase (protein kinase related), diverged (NCBI ptt file)||67, 329|
|CAC2632||CAC2632||Hypothetical protein (NCBI ptt file)||310, 329|
|CAC2641||tig||FKBP-type peptidyl-prolyl cis-transisomerase (trigger factor) (NCBI ptt file)||304, 329|
|CAC2845||prfB||Protein chain release factor B (NCBI ptt file)||329, 335|
|CAC2846||secA||Preprotein translocase subunit SecA (ATPase, RNA helicase) (NCBI ptt file)||100, 329|
|CAC2880||CAC2880||Ribose 5-phosphate isomerase, RpiB (NCBI ptt file)||36, 329|
|CAC2884||prfA||Protein chain release factor A (NCBI ptt file)||213, 229|
|CAC2895||ddlA||D-alanine-D-alanine ligase (NCBI ptt file)||310, 329|
|CAC3006||CAC3006||Zn-dependent peptidase, insulinase family (NCBI ptt file)||243, 329|
|CAC3187||CAC3187||Predicted nucleic-acid-binding protein protein, containing HHH domain, YACK B.subtilis ortholog (NCBI ptt file)||36, 329|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Network inference algorithm uses de novo motif prediction for assigning genes to modules. If there are any motifs identified in the upstream region of a gene, the motif will be shown here. For each motif sequence logo, consensus and e-value will be shown.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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