Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC1996(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 2 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC1996
|Gene||Common Name||Description||Module membership|
|CAC0186||CAC0186||Xre family DNA-binding domain and TPR-repeat-containing protein (NCBI ptt file)||68, 183|
|CAC1147||CAC1147||Hypothetical protein (NCBI ptt file)||16, 68|
|CAC1148||CAC1148||Hypothetical protein (NCBI ptt file)||16, 68|
|CAC1151||CAC1151||Hypothetical protein (NCBI ptt file)||16, 68|
|CAC1154||CAC1154||Hypothetical protein (NCBI ptt file)||16, 68|
|CAC1220||CAC1220||Hypothetical protein (NCBI ptt file)||68, 275|
|CAC1533||CAC1533||Hypothetical protein (NCBI ptt file)||68, 336|
|CAC1770||CAC1770||RNA polymerase sigma factor, SigK-like (NCBI ptt file)||53, 68|
|CAC1986||CAC1986||Hypothetical protein (NCBI ptt file)||68, 183|
|CAC1988||CAC1988||Ferrichrome-binding periplasmic protein (NCBI ptt file)||68, 97|
|CAC1989||CAC1989||ABC-type iron (III) transport system, ATPase component (NCBI ptt file)||68, 294|
|CAC1991||CAC1991||Uncharacterized protein, YIIM family (NCBI ptt file)||68, 294|
|CAC1992||moaC||Molybdenum cofactor biosynthesis enzyme, MoaC (NCBI ptt file)||68, 166|
|CAC1993||moaA||Molybdenum cofactor biosynthesis enzyme MoaA, Fe-S oxidoreductase (NCBI ptt file)||97, 294|
|CAC1994||moaB||Molybdopterin biosynthesis enzyme, MoaB (NCBI ptt file)||53, 68|
|CAC1996||CAC1996||Hypothetical protein (NCBI ptt file)||68, 97|
|CAC1997||CAC1997||Predicted glycosyltransferase (NCBI ptt file)||68, 97|
|CAC1998||CAC1998||ABC-type transport system, ATPase component (NCBI ptt file)||68, 97|
|CAC1999||CAC1999||Uncharacterized protein related to hypothetical protein Cj1507c from Campylobacter jejuni (NCBI ptt file)||97, 294|
|CAC2000||iorB||Indolepyruvate ferredoxin oxidoreductase, subunit beta (NCBI ptt file)||68, 294|
|CAC2001||iorA||Indolepyruvate ferredoxin oxidoreductase, subunit alpha (NCBI ptt file)||97, 166|
|CAC2002||CAC2002||Predicted iron-sulfur flavoprotein (NCBI ptt file)||68, 97|
|CAC2003||CAC2003||Predicted permease (NCBI ptt file)||97, 166|
|CAC2005||CAC2005||Siderophore/Surfactin synthetase related protein (NCBI ptt file)||97, 166|
|CAC2006||CAC2006||Enzyme of siderophore/surfactin biosynthesis (NCBI ptt file)||68, 97|
|CAC2007||CAC2007||Predicted glycosyltransferase (NCBI ptt file)||97, 209|
|CAC2008||pksF||3-oxoacyl-(acyl-carrier-protein) synthase (NCBI ptt file)||68, 97|
|CAC2009||mmgB||3-Hydroxyacyl-CoA dehydrogenase (NCBI ptt file)||97, 166|
|CAC2010||CAC2010||Predicted Fe-S oxidoreductase (NCBI ptt file)||97, 166|
|CAC2011||fabH||Possible 3-oxoacyl-[acyl-carrier-protein] synthase III (NCBI ptt file)||97, 209|
|CAC2012||fadB||Enoyl-CoA hydratase (NCBI ptt file)||97, 294|
|CAC2013||CAC2013||Hypothetical protein (NCBI ptt file)||53, 97|
|CAC2014||CAC2014||Predicted esterase (NCBI ptt file)||97, 166|
|CAC2015||CAC2015||Hypothetical protein (NCBI ptt file)||53, 97|
|CAC2016||fadB||Enoyl-CoA hydratase (NCBI ptt file)||97, 209|
|CAC2403||CAC2403||Predicted membrane protein (NCBI ptt file)||68, 115|
|CAC3479||CAC3479||Hypothetical protein (NCBI ptt file)||26, 68|
|CAC3573||fabF||3-oxoacyl-(acyl-carrier-protein) synthase I (NCBI ptt file)||68, 183|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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