Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC2182(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC2182
|Gene||Common Name||Description||Module membership|
|CAC0279||CAC0279||Peptidil-prolyl cis-trans isomerase (NCBI ptt file)||251, 348|
|CAC0324||CAC0324||TPR repeats containing protein (NCBI ptt file)||25, 348|
|CAC0641||CAC0641||Uncharacterized conserved protein (NCBI ptt file)||109, 348|
|CAC0650||CAC0650||Adenilate cyclase, class2 (thermophilic) (NCBI ptt file)||20, 348|
|CAC0751||CAC0751||Permease (NCBI ptt file)||322, 348|
|CAC0815||CAC0815||Methyl-accepting chemotaxis protein (NCBI ptt file)||134, 209|
|CAC0816||CAC0816||Lipase-esterase related protein (NCBI ptt file)||176, 209|
|CAC0869||CAC0869||Thioredoxine reductase (NCBI ptt file)||31, 209|
|CAC0876||CAC0876||Transcriptional regulator, MarR/EmrR family (NCBI ptt file)||77, 348|
|CAC0877||cfa||Cyclopropane fatty acid synthase (NCBI ptt file)||77, 348|
|CAC0957||CAC0957||Xre family DNA-binding domain and TPR-repeat-containing protein (NCBI ptt file)||298, 348|
|CAC0958||CAC0958||Xre family DNA-binding domain and TPR-repeat-containing protein (NCBI ptt file)||348, 365|
|CAC0982||CAC0982||Hypothetical protein (NCBI ptt file)||209, 266|
|CAC1001||CAC1001||Aspartate aminotransferase (NCBI ptt file)||34, 348|
|CAC1002||CAC1002||Nicotinic acid phosphoribosyltransferase (NCBI ptt file)||49, 348|
|CAC1036||pykA||Pyruvate kinase (NCBI ptt file)||348, 359|
|CAC1096||CAC1096||Uncharacterized protein, YjiN homolog (NCBI ptt file)||277, 348|
|CAC1238||CAC1238||Hypothetical protein (NCBI ptt file)||62, 348|
|CAC1436||CAC1436||Hypothetical protein (NCBI ptt file)||261, 348|
|CAC1669||CstA||Carbon starvation protein (NCBI ptt file)||209, 238|
|CAC1764||CAC1764||Predicted glutamine amidotransferase (NCBI ptt file)||31, 209|
|CAC1854||CAC1854||Nudix (MutT) family hydrolase (NCBI ptt file)||209, 277|
|CAC1868||CAC1868||Uncharacterized secreted protein, homolog YXKC Bacillus subtilis (NCBI ptt file)||152, 348|
|CAC1943||CAC1943||Hypothetical protein (NCBI ptt file)||238, 348|
|CAC2004||CAC2004||Siderophore/Surfactin synthetase related protein (NCBI ptt file)||60, 209|
|CAC2007||CAC2007||Predicted glycosyltransferase (NCBI ptt file)||97, 209|
|CAC2011||fabH||Possible 3-oxoacyl-[acyl-carrier-protein] synthase III (NCBI ptt file)||97, 209|
|CAC2016||fadB||Enoyl-CoA hydratase (NCBI ptt file)||97, 209|
|CAC2017||CAC2017||Acyl carrier protein (NCBI ptt file)||134, 209|
|CAC2018||CAC2018||Aldehyde:ferredoxin oxidoreductase (NCBI ptt file)||134, 209|
|CAC2021||moeA||Molybdopterin biosynthesis enzyme, MoeA (short form) (NCBI ptt file)||133, 209|
|CAC2022||moaB||Molybdopterin biosynthesis enzyme, moaB (NCBI ptt file)||209, 282|
|CAC2025||CAC2025||Hypothetical protein (NCBI ptt file)||209, 282|
|CAC2182||CAC2182||Hypothetical protein (NCBI ptt file)||209, 348|
|CAC2197||CAC2197||Aminoglycoside N3'-acetyltransferase (NCBI ptt file)||157, 348|
|CAC2201||CAC2201||Hypothetical protein (NCBI ptt file)||238, 348|
|CAC2377||oppA||Oligopeptide ABC-type transporter, periplasmic binding component (Frameshift) (NCBI ptt file)||299, 348|
|CAC2446||CAC2446||Hypothetical protein (NCBI ptt file)||27, 209|
|CAC2549||CAC2549||Uncharacterized conserved protein (NCBI ptt file)||92, 348|
|CAC3037||ccpA||Catabolite control protein, LacI family transcriptional regulator (NCBI ptt file)||11, 209|
|CAC3279||CAC3279||Possible surface protein, responsible for cell interaction; contains cell adhesion domain and ChW-repeats (NCBI ptt file)||209, 261|
|CAC3290||CAC3290||Iron-regulated ABC-type transporter membrane component (SufB) (NCBI ptt file)||201, 209|
|CAC3291||CAC3291||Selenocysteine lyase, NifS family (NCBI ptt file)||209, 296|
|CAC3292||CAC3292||NifU homolog involved in Fe-S cluster formation (NCBI ptt file)||209, 277|
|CAC3295||CAC3295||Probable cation efflux pump (multidrug resistance protein) (NCBI ptt file)||77, 348|
|CAC3592||CAC3592||Hypothetical protein, CF-27 family (NCBI ptt file)||92, 209|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Network inference algorithm uses de novo motif prediction for assigning genes to modules. If there are any motifs identified in the upstream region of a gene, the motif will be shown here. For each motif sequence logo, consensus and e-value will be shown.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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