Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC2373(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC2373
|Gene||Common Name||Description||Module membership|
|CAC0027||pyrE||Orotate phosphoribosyltranspherase (NCBI ptt file)||84, 254|
|CAC0158||glmS||Glucoseamine-fructose-6-phosphate aminotransferase (gene glmS) (NCBI ptt file)||36, 84|
|CAC0883||CAC0883||Probable cation efflux pump (multidrug resistance protein) (NCBI ptt file)||84, 254|
|CAC0944||tkt||Transketolase (NCBI ptt file)||84, 292|
|CAC1015||CAC1015||Pseudouridylate synthase (NCBI ptt file)||76, 306|
|CAC1234||pheB||Chorismate mutase PheB of B.subtilis ortholog (NCBI ptt file)||76, 215|
|CAC1251||rodA||Cell division protein, rodA/ftsW/spoVE family (NCBI ptt file)||76, 281|
|CAC1255||CAC1255||Uncharacterized conserved protein (NCBI ptt file)||84, 254|
|CAC1256||CAC1256||Ribonucleases G/E family protein (NCBI ptt file)||84, 258|
|CAC1278||lepA||Membrane GTPase lepA (NCBI ptt file)||84, 254|
|CAC1295||CAC1295||ERA GTPase (NCBI ptt file)||64, 84|
|CAC1501||CAC1501||DNA-methyltransferase (cytosine-specific), ortholog of BSP6I Bsubtilis (NCBI ptt file)||76, 79|
|CAC1612||CAC1612||Probable cation efflux pump, multidrug resistance protein (FS) (NCBI ptt file)||76, 149|
|CAC1613||CAC1613||ABC-type multidrug/protein/lipid transport system, membrane ATPase component (NCBI ptt file)||76, 249|
|CAC1712||gpsA||Glycerol 3-phosphate dehydrogenase (NCBI ptt file)||84, 350|
|CAC1757||CAC1757||RimM protein, required for 16S rRNA processing (NCBI ptt file)||76, 297|
|CAC1758||trmD||TRNA-(guanine-N1)-methyltransferase, TrmD (NCBI ptt file)||76, 297|
|CAC2062||CAC2062||TRNA nucleotidyltransferase family enzyme (NCBI ptt file)||76, 211|
|CAC2083||folD||Tetrahydrofolate dehydrogenase/cyclohydrolase, FolD (NCBI ptt file)||84, 310|
|CAC2228||CAC2228||Hypothetical protein (NCBI ptt file)||76, 281|
|CAC2317||tagA||Teichoic acid biosynthesis protein, tagA (NCBI ptt file)||84, 211|
|CAC2339||CAC2339||Uncharacterized protein, YBBK B.subtilis ortholog (NCBI ptt file)||76, 123|
|CAC2358||CAC2358||RRNA methylase, YSGA B.subtilis ortholog (NCBI ptt file)||84, 353|
|CAC2373||CAC2373||Predicted membrane protein (NCBI ptt file)||76, 84|
|CAC2401||CAC2401||Activator of 2-hydroxyglutaryl-CoA dehydratase (duplicated HSP70 class ATPase domain) fused to uncharacterized conserved protein (NCBI ptt file)||28, 84|
|CAC2713||CAC2713||AT-rich DNA-binding protein (NCBI ptt file)||76, 281|
|CAC2740||hisS||Histidyl-tRNA synthetase (NCBI ptt file)||84, 324|
|CAC2850||CAC2850||Proline/glycine betaine ABC-type transport system, ATPase component (NCBI ptt file)||8, 84|
|CAC2852||comFC||Predicted amidophosphoribosyltransferase, ComFC B.suntilis ortholog (NCBI ptt file)||76, 149|
|CAC2855||CAC2855||Predicted membrane protein (NCBI ptt file)||59, 76|
|CAC2872||CAC2872||Predicted membrane protein in FoF1-type ATP synthase operon (NCBI ptt file)||76, 162|
|CAC2881||CAC2881||Protein-tyrosine-phosphatase, YWLE B.subtilis ortholog (NCBI ptt file)||35, 76|
|CAC2894||CAC2894||Uncharacterized protein, ywiB B.subtilis homolog (NCBI ptt file)||84, 310|
|CAC2948||CAC2948||ATPase components of ABC transporter with duplicated ATPase domains (second domain is inactivated) (NCBI ptt file)||79, 84|
|CAC2983||CAC2983||Hypothetical protein (NCBI ptt file)||84, 350|
|CAC2990||csp||Cold shock protein (NCBI ptt file)||32, 76|
|CAC3010||CAC3010||ATP-dependent RNA helicase (superfamily II), YDBR B.subtilis ortholog (NCBI ptt file)||84, 106|
|CAC3012||CAC3012||ATPase component of ABC transporter, with duplicated ATPase domains (NCBI ptt file)||44, 84|
|CAC3100||CAC3100||Predicted permease (Cobalt permease subfamily) (NCBI ptt file)||84, 106|
|CAC3156||CAC3156||Uncharacterized conserved protein, YACZ B.subtilis ortholog (NCBI ptt file)||84, 324|
|CAC3200||CAC3200||Predicted transcriptional regulator, homolog of Bvg accessory factor (NCBI ptt file)||76, 116|
|CAC3281||CAC3281||ABC-type multidrug/protein/lipid transport system, ATPase component (NCBI ptt file)||84, 324|
|CAC3537||CAC3537||Fragment of SECA (fragment) (NCBI ptt file)||76, 229|
|CAC3721||CAC3721||Hypothetical secreted protein (NCBI ptt file)||84, 324|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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