Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC3103(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for CAC3103
Module neighborhood information for CAC3103
|Gene||Common Name||Description||Module membership|
|CAC0013||CAC0013||Uncharacterized small conserved protein, ortholog of T.maritima (4981999) and P.abyssi (5457704) (NCBI ptt file)||59, 253|
|CAC0113||CAC0113||Transcriptional regulator of sugar metabolism (NCBI ptt file)||20, 346|
|CAC0114||CAC0114||Predicted membrane protein (NCBI ptt file)||20, 286|
|CAC0116||CAC0116||Carbone-monoxide dehydrogenase, beta chain (NCBI ptt file)||20, 182|
|CAC0433||CAC0433||Methyl-accepting chemotaxis protein (NCBI ptt file)||20, 225|
|CAC0650||CAC0650||Adenilate cyclase, class2 (thermophilic) (NCBI ptt file)||20, 348|
|CAC0680||CAC0680||Predicted membrane protein (NCBI ptt file)||52, 59|
|CAC0701||CAC0701||Uncharacterised protein, DegV family (NCBI ptt file)||20, 58|
|CAC0708||CAC0708||Putative transcriptional regulator (NCBI ptt file)||20, 359|
|CAC0709||gapC||Glyceraldehyde 3-phosphate dehydrogenase, gene gapC (NCBI ptt file)||10, 20|
|CAC0712||pgm||2,3-bisphosphoglycerate-independent phosphoglycerate mutase gene (NCBI ptt file)||20, 292|
|CAC0990||gltX||Glutamyl-tRNA synthetase (NCBI ptt file)||20, 306|
|CAC1065||CAC1065||Uncharacterized protein, related stage III sporulation protein AH of Bacillus sp. (NCBI ptt file)||59, 304|
|CAC1538||CAC1538||Predicted permease, YCXC B.subtilis ortholog (NCBI ptt file)||59, 151|
|CAC1693||ftsZ||Cell division GTPase FtsZ (NCBI ptt file)||20, 233|
|CAC1740||CAC1740||Uncharcaterized membrane protein, YLBJ B.subtilis homolog (NCBI ptt file)||59, 304|
|CAC1744||CAC1744||Predicted Zn-finger-like protein, possible nucleic acid binding (NCBI ptt file)||59, 61|
|CAC1787||rpsB||Ribosomal protein S2 (NCBI ptt file)||59, 61|
|CAC2095||CAC2095||Aminopeptidase P AMPP/PEPQ family enzyme, YQHT B.subtilis ortholog (NCBI ptt file)||20, 286|
|CAC2227||CAC2227||Phosphoserine phosphatase family enzyme (NCBI ptt file)||20, 286|
|CAC2229||CAC2229||Pyruvate:ferredoxin oxidoreductase (NCBI ptt file)||59, 63|
|CAC2264||glyA||Glycine hydroxymethyltransferase (NCBI ptt file)||20, 286|
|CAC2332||spsJ||DTDP-D-glucose 4,6-dehydratase (NCBI ptt file)||20, 239|
|CAC2409||CAC2409||Transglutaminase-like enzyme, putative cysteine protease (NCBI ptt file)||59, 105|
|CAC2633||CAC2633||Uncharaterized conserved protein, YOME B.subtilis ortholog (NCBI ptt file)||20, 58|
|CAC2656||CAC2656||Protein containing uncharacterized domain from NimC family (NCBI ptt file)||59, 296|
|CAC2657||CAC2657||Polyferredoxin (NCBI ptt file)||59, 296|
|CAC2709||etfA||Electron transfer flavoprotein alpha-subunit (NCBI ptt file)||10, 59|
|CAC2748||deaD||ATP dependent RNA helicase DeaD, superfamily II (NCBI ptt file)||59, 333|
|CAC2771||CAC2771||Amino acid transporter (NCBI ptt file)||20, 286|
|CAC2779||CAC2779||Hypothetical protein (NCBI ptt file)||20, 259|
|CAC2780||CAC2780||Spore coat protein, cotF related (NCBI ptt file)||20, 259|
|CAC2855||CAC2855||Predicted membrane protein (NCBI ptt file)||59, 76|
|CAC2865||atpD||FoF1-type ATP synthase beta subunit (NCBI ptt file)||59, 304|
|CAC2866||atpG||FoF1-type ATP synthase gamma subunit (NCBI ptt file)||59, 335|
|CAC2867||atpA||FoF1-type ATP synthase alpha subunit (NCBI ptt file)||59, 335|
|CAC2868||atpH||FoF1-type ATP synthase delta subunit (NCBI ptt file)||59, 335|
|CAC2870||atpE||FoF1-type ATP synthase C subunit (NCBI ptt file)||59, 304|
|CAC2871||atpB||FoF1-type ATP synthase A subunit (NCBI ptt file)||59, 79|
|CAC2887||tdk||Thymidine kinase (NCBI ptt file)||59, 337|
|CAC2889||rho||Transcription termination factor rho (NCBI ptt file)||20, 239|
|CAC2896||CAC2896||Uncharacterized protein, YPEB B.subtilis ortholog (NCBI ptt file)||59, 179|
|CAC3097||rpsI||Ribosomal protein S9 (NCBI ptt file)||20, 237|
|CAC3103||rplQ||Ribosomal protein L17 (NCBI ptt file)||20, 59|
|CAC3106||rpsK||Ribosomal protein S11 (NCBI ptt file)||59, 362|
|CAC3114||rplO||Ribosomal protein L15 (NCBI ptt file)||59, 335|
|CAC3121||rplE||Ribosomal protein L5 (NCBI ptt file)||59, 241|
|CAC3215||prsA||Parvulin-like peptidyl-prolyl isomerase, PRSA B.subtilis ortholog (NCBI ptt file)||53, 59|
|CAC3437||CAC3437||Predicted membrane-associated Zn-dependent protease, HtpX family (BlaR subfamily) (NCBI ptt file)||59, 253|
|CAC3578||fabH||3-oxoacyl-[acyl-carrier-protein] synthase III (NCBI ptt file)||20, 356|
|CAC3579||CAC3579||Transcriptional regulator, MarR/EmrR family (NCBI ptt file)||20, 356|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
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