Organism : Clostridium acetobutylicum | Module List :
Membrane associated methyl-accepting chemotaxis protein with HAMP domain (NCBI ptt file)
Functional Annotations (6)
|Methyl-accepting chemotaxis protein||cog/ cog|
|two-component sensor activity||go/ molecular_function|
|signal transducer activity||go/ molecular_function|
|signal transduction||go/ biological_process|
Regulation information for CAC3352(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for CAC3352
Module neighborhood information for CAC3352
|Gene||Common Name||Description||Module membership|
|CAC0278||CAC0278||Aspartate kinase (NCBI ptt file)||85, 151|
|CAC0306||CAC0306||SAM-dependent methyltransferase (NCBI ptt file)||217, 353|
|CAC0307||CAC0307||Predicted methyltransferase (NCBI ptt file)||191, 217|
|CAC0415||CAC0415||TPR-repeat-containing protein (NCBI ptt file)||151, 217|
|CAC0416||CAC0416||TPR-repeat-containing protein (NCBI ptt file)||151, 217|
|CAC0506||CAC0506||Penicillin-binding protein (NCBI ptt file)||151, 215|
|CAC0507||CAC0507||Predicted metal-dependent membrane hydrolase (NCBI ptt file)||151, 215|
|CAC0585||CAC0585||N-terminal CheY reciever domain fused to C-terminal uncharacterized CheX-like domain (NCBI ptt file)||66, 151|
|CAC0633||CAC0633||Predicted phosphatase (NCBI ptt file)||82, 151|
|CAC0685||CAC0685||Putative Mn transporter, NRAMP family (NCBI ptt file)||151, 215|
|CAC0698||CAC0698||Predicted hydrolase of the HAD superfamily (NCBI ptt file)||217, 351|
|CAC0699||CAC0699||Spore photoproduct lyase, splB (NCBI ptt file)||9, 217|
|CAC0826||CAC0826||Endoglucanase family 5 (NCBI ptt file)||151, 359|
|CAC0849||CAC0849||Predicted transcriptional regulator (NCBI ptt file)||151, 216|
|CAC0908||CAC0908||Dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis family 1 (NCBI ptt file)||217, 324|
|CAC0961||CAC0961||Cobyric acid synthase CobQ (NCBI ptt file)||151, 201|
|CAC0962||CAC0962||UDP-N-acetylmuramyl tripeptide synthetase (NCBI ptt file)||79, 151|
|CAC1172||CAC1172||Predicted integrase of XerC/XerD family, diverged (NCBI ptt file)||151, 238|
|CAC1318||CAC1318||Hypothetical protein (NCBI ptt file)||151, 252|
|CAC1538||CAC1538||Predicted permease, YCXC B.subtilis ortholog (NCBI ptt file)||59, 151|
|CAC1559||CAC1559||Predicted transcriptional regulator (NCBI ptt file)||109, 151|
|CAC1690||pilT||PilT ATPase involved in pili biogenesis (NCBI ptt file)||92, 217|
|CAC1741||CAC1741||Uncharacterized conserved protein, YLBM B.subtilis ortholog (NCBI ptt file)||151, 270|
|CAC2166||CAC2166||Nucleoside-diphosphate-sugar epimerase (NCBI ptt file)||96, 217|
|CAC3177||cysS||Cysteinyl-tRNA synthetase (NCBI ptt file)||191, 217|
|CAC3178||proS||Prolyl-tRNA synthetase (NCBI ptt file)||191, 217|
|CAC3247||CAC3247||Predicted transcriptional regulator, lacI/xre family (NCBI ptt file)||151, 359|
|CAC3263||CAC3263||Hypothetical protein (NCBI ptt file)||52, 151|
|CAC3352||CAC3352||Membrane associated methyl-accepting chemotaxis protein with HAMP domain (NCBI ptt file)||151, 217|
|CAC3492||CAC3492||Uncharacterized conserved protein (NCBI ptt file)||205, 217|
|CAC3517||CAC3517||Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) (NCBI ptt file)||217, 326|
|CAC3544||CAC3544||Membrane associated GGDEF domain containing protein (NCBI ptt file)||191, 217|
|CAC3545||CAC3545||Methyl-accepting chemotaxis protein (NCBI ptt file)||191, 217|
|CAC3642||CAC3642||Oligopeptide ABC transporter, ATPase component (NCBI ptt file)||65, 217|
|CAC3643||CAC3643||Oligopeptide ABC transporter, permease component (NCBI ptt file)||43, 217|
|CAC3644||CAC3644||Oligopeptide ABC transporter, permease component (NCBI ptt file)||217, 301|
|CAC3675||CAC3675||Hypothetical secreted protein (NCBI ptt file)||106, 151|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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