Organism : Campylobacter jejuni | Module List :
Regulation information for Cj0957c(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for Cj0957c
|Gene||Common Name||Description||Module membership|
|Cj0031||Cj0031||putative type IIS restriction/modification enzyme (NCBI)||106, 141|
|Cj0124c||Cj0124c||putative membrane protein (NCBI ptt file)||23, 141|
|Cj0159c||Cj0159c||hypothetical protein Cj0159c (NCBI ptt file)||141, 149|
|Cj0189c||Cj0189c||hypothetical protein Cj0189c (NCBI ptt file)||76, 141|
|Cj0298c||panB||3-methyl-2-oxobutanoate hydroxymethyltransferase (NCBI ptt file)||98, 142|
|Cj0320||fliH||putative flagellar assembly protein (NCBI ptt file)||99, 141|
|Cj0337c||motA||putative flagellar motor proton channel (NCBI ptt file)||74, 142|
|Cj0350||Cj0350||hypothetical protein Cj0350 (NCBI ptt file)||91, 142|
|Cj0383c||ribH||6,7-dimethyl-8-ribityllumazine synthase (NCBI ptt file)||82, 142|
|Cj0384c||kdsA||2-dehydro-3-deoxyphosphooctonate aldolase (NCBI ptt file)||142, 170|
|Cj0393c||Cj0393c||putative oxidoreductase (NCBI ptt file)||87, 142|
|Cj0426||Cj0426||ABC transporter ATP-binding protein (NCBI ptt file)||91, 142|
|Cj0427||Cj0427||hypothetical protein Cj0427 (NCBI ptt file)||91, 142|
|Cj0513||Cj0513||hypothetical protein Cj0513 (NCBI ptt file)||116, 142|
|Cj0527c||flgC||flagellar basal-body rod protein (NCBI ptt file)||142, 170|
|Cj0612c||cft||ferritin (NCBI ptt file)||142, 170|
|Cj0647||Cj0647||hypothetical protein Cj0647 (NCBI ptt file)||141, 151|
|Cj0701||Cj0701||putative protease (NCBI ptt file)||110, 141|
|Cj0702||purE||phosphoribosylaminoimidazole carboxylase catalytic subunit (NCBI ptt file)||83, 141|
|Cj0703||Cj0703||hypothetical protein Cj0703 (NCBI ptt file)||14, 141|
|Cj0707||kdtA||3-deoxy-D-manno-octulosonic-acid transferase (NCBI ptt file)||141, 149|
|Cj0708||Cj0708||putative ribosomal pseudouridine synthase (NCBI ptt file)||55, 141|
|Cj0770c||Cj0770c||putative periplasmic protein (NCBI ptt file)||94, 141|
|Cj0811||lpxK||putative tetraacyldisaccharide 4'-kinase (NCBI ptt file)||11, 141|
|Cj0825||Cj0825||putative processing peptidase (NCBI ptt file)||104, 141|
|Cj0922c||pebC||ABC-type amino-acid transporter ATP-binding protein (NCBI ptt file)||91, 142|
|Cj0957c||Cj0957c||hypothetical protein Cj0957c (NCBI ptt file)||141, 142|
|Cj0973||Cj0973||hypothetical protein Cj0973 (NCBI ptt file)||7, 141|
|Cj1029c||mapA||putative lipoprotein (NCBI ptt file)||20, 142|
|Cj1075||Cj1075||hypothetical protein Cj1075 (NCBI ptt file)||137, 142|
|Cj1118c||cheY||chemotaxis regulatory protein (NCBI ptt file)||43, 142|
|Cj1130c||wlaB||ABC-type transport protein (NCBI ptt file)||62, 141|
|Cj1176c||Cj1176c||hypothetical protein Cj1176c (NCBI ptt file)||137, 142|
|Cj1178c||Cj1178c||highly acidic protein (NCBI ptt file)||77, 142|
|Cj1246c||uvrC||excinuclease ABC subunit C (NCBI ptt file)||12, 141|
|Cj1273c||rpoZ||putative DNA-directed RNA polymerase omega chain (NCBI ptt file)||142, 170|
|Cj1274c||pyrH||uridylate kinase (NCBI ptt file)||142, 170|
|Cj1282||mrdB||RodA protein homolog (NCBI ptt file)||26, 141|
|Cj1303||fabH2||putative 3-oxoacyl-[acyl-carrier-protein] synthase (NCBI ptt file)||106, 141|
|Cj1403c||gapA||glyceraldehyde 3-phosphate dehydrogenase (NCBI ptt file)||137, 142|
|Cj1408||fliL||possible flagellar protein (NCBI ptt file)||91, 142|
|Cj1415c||cysC||possible adenylylsulfate kinase (NCBI ptt file)||109, 141|
|Cj1419c||Cj1419c||possible methyltransferase (NCBI ptt file)||91, 142|
|Cj1440c||Cj1440c||putative sugar transferase (NCBI ptt file)||128, 141|
|Cj1478c||cadF||outer membrane fibronectin-binding protein (NCBI ptt file)||82, 142|
|Cj1589||Cj1589||hypothetical protein Cj1589 (NCBI ptt file)||141, 146|
|Cj1600||hisH||amidotransferase HisH (NCBI ptt file)||133, 141|
|Cj1611||rpsT||30S ribosomal protein S20 (NCBI ptt file)||14, 141|
|Cj1643||Cj1643||putative periplasmic protein (NCBI ptt file)||62, 141|
|Cj1670c||Cj1670c||putative periplasmic protein (NCBI ptt file)||128, 141|
|Cj1709c||Cj1709c||putative ribosomal pseudouridine synthase (NCBI ptt file)||128, 141|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Regulation tab for each gene includes regulatory influences such as environmental factors or transcription factors or their combinations identified by regulatory network inference algorithms.
If the gene is a member of a module, regulators influencing that module are also considered to regulate the gene. Regulators table list total number of regulatory influences, regulators, modules and type of the influence.
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Module Members Tab
Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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