Organism : Campylobacter jejuni | Module List :
Regulation information for Cj1109(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for Cj1109
Module neighborhood information for Cj1109
|Gene||Common Name||Description||Module membership|
|Cj0096||Cj0096||putative GTP-binding protein (NCBI ptt file)||18, 96|
|Cj0167c||Cj0167c||putative integral membrane protein (NCBI ptt file)||96, 104|
|Cj0225||Cj0225||putative acetyltransferase (NCBI ptt file)||104, 109|
|Cj0226||argB||acetylglutamate kinase (NCBI ptt file)||96, 104|
|Cj0227||argD||acetylornithine aminotransferase (NCBI ptt file)||96, 104|
|Cj0306c||bioF||8-amino-7-oxononanoate synthase (NCBI ptt file)||96, 104|
|Cj0349||trpA||tryptophan synthase alpha chain (NCBI ptt file)||104, 109|
|Cj0353c||Cj0353c||phosphatase (NCBI ptt file)||109, 134|
|Cj0503c||hemH||putative ferrochelatase (NCBI ptt file)||23, 96|
|Cj0633||Cj0633||putative periplasmic protein (NCBI ptt file)||24, 109|
|Cj0634||Cj0634||SMF family protein (NCBI ptt file)||106, 109|
|Cj0635||Cj0635||hypothetical protein Cj0635 (NCBI ptt file)||7, 109|
|Cj0652||pbpC||penicillin-binding protein (NCBI ptt file)||96, 109|
|Cj0747||Cj0747||hypothetical protein Cj0747 (NCBI ptt file)||23, 96|
|Cj0948c||Cj0948c||putative transmembrane transport protein (NCBI ptt file)||45, 96|
|Cj0956c||thdF||putative thiophene and furan oxidation protein (NCBI ptt file)||81, 96|
|Cj0985c||hipO||hippurate hydrolase (NCBI ptt file)||24, 109|
|Cj1081c||thiE||thiamin-phosphate pyrophosphorylase (NCBI ptt file)||18, 109|
|Cj1101||Cj1101||ATP-dependent DNA helicase (NCBI ptt file)||7, 96|
|Cj1109||aat||putative leucyl/phenylalanyl-tRNA--protein transferase (NCBI ptt file)||96, 109|
|Cj1122c||wlaJ||putative integral membrane protein (NCBI ptt file)||32, 109|
|Cj1123c||wlaI||putative transferase (NCBI ptt file)||96, 109|
|Cj1124c||wlaH||putative galactosyltransferase (NCBI ptt file)||109, 118|
|Cj1125c||wlaG||putative galactosyltransferase (NCBI ptt file)||106, 109|
|Cj1127c||wlaE||putative glycosyltransferase (NCBI ptt file)||109, 125|
|Cj1174||Cj1174||putative efflux protein (NCBI ptt file)||109, 158|
|Cj1245c||Cj1245c||putative membrane protein (NCBI ptt file)||23, 96|
|Cj1319||Cj1319||putative nucleotide sugar dehydratase (NCBI ptt file)||109, 139|
|Cj1330||Cj1330||hypothetical protein Cj1330 (NCBI ptt file)||24, 109|
|Cj1333||Cj1333||hypothetical protein Cj1333 (1318 family) (NCBI ptt file)||63, 109|
|Cj1360c||Cj1360c||putative proteolysis tag for 10Sa_RNA (NCBI ptt file)||86, 96|
|Cj1415c||cysC||possible adenylylsulfate kinase (NCBI ptt file)||109, 141|
|Cj1417c||Cj1417c||hypothetical protein Cj1417c (NCBI ptt file)||24, 109|
|Cj1418c||Cj1418c||hypothtical protein Cj1418c (NCBI ptt file)||109, 169|
|Cj1423c||Cj1423c||putative sugar-phosphate nucleotidyltransferase (NCBI ptt file)||18, 109|
|Cj1424c||gmhA2||putative phosphoheptose isomerase (NCBI ptt file)||109, 148|
|Cj1425c||Cj1425c||putative sugar kinase (NCBI ptt file)||109, 153|
|Cj1427c||Cj1427c||putative sugar-nucleotide epimerase/dehydratease (NCBI ptt file)||109, 148|
|Cj1428c||fcl||putative fucose synthetase (NCBI ptt file)||109, 148|
|Cj1429c||Cj1429c||hypothetical protein Cj1429c (NCBI ptt file)||24, 109|
|Cj1432c||Cj1432c||putative sugar transferase (NCBI ptt file)||60, 109|
|Cj1443c||kpsF||KpsF protein (NCBI ptt file)||23, 109|
|Cj1453c||Cj1453c||hypothetical protein Cj1453c (NCBI ptt file)||48, 96|
|Cj1473c||Cj1473c||putative ATP/GTP-binding protein (NCBI ptt file)||23, 96|
|Cj1533c||Cj1533c||putative helix-turn-helix containsing protein (NCBI ptt file)||109, 128|
|Cj1552c||Cj1552c||hypothetical protein Cj1552c (NCBI ptt file)||76, 96|
|Cj1601||hisA||phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (NCBI ptt file)||19, 109|
|Cj1620c||mutY||A/G-specific adenine glycosylase (NCBI ptt file)||96, 109|
|Cj1676||murB||putative UDP-N-acetylenolpyruvoylglucosamine reductase (NCBI ptt file)||96, 152|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Regulation tab for each gene includes regulatory influences such as environmental factors or transcription factors or their combinations identified by regulatory network inference algorithms.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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