PHATRDRAFT_13384 dna topoisomerase i (TOPEUc)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_13384 chr_11 dna topoisomerase i (TOPEUc) 230693 232722 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0036

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0216
 0.38

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Topoisom_I_N Eukaryotic DNA topoisomerase I, DNA binding fragment; Topoisomerase I promotes the relaxation of... cl02774 281.006 1.58E-90 16 - 232 specific 251619
Topoisomer_IB_N superfamily Topoisomer_IB_N: N-terminal DNA binding fragment found in eukaryotic DNA topoisomerase (topo) IB... - 281.006 1.58E-90 16 - 232 superfamily 261440
Topoisom_I Eukaryotic DNA topoisomerase I, catalytic core; Topoisomerase I promotes the relaxation of DNA... cl00213 192.367 1.16E-56 241 - 466 specific 250305
DNA_BRE_C superfamily DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme... - 192.367 1.16E-56 241 - 466 superfamily 260266
Topo_C_assoc superfamily C-terminal topoisomerase domain; This domain is found at the C-terminal of topoisomerase and other... - 140.443 4.09E-40 516 - 586 superfamily 258541
Topo_C_assoc superfamily C-terminal topoisomerase domain; This domain is found at the C-terminal of topoisomerase and other... - 140.443 4.09E-40 516 - 586 superfamily 258541
TOPEUc DNA Topoisomerase I (eukaryota); DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina... - 431.773 1.91E-146 163 - 559 multi-dom 214661

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
9772 Not available 225326 319867 462815 Cre03.g178600.t1.1 AT5G55310.1 358817

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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