PHATRDRAFT_17683 synaptobrevin-like protein (Synaptobrevin)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_17683	chr_1	synaptobrevin-like protein (Synaptobrevin)	1656282	1657081	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0362

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0175	0.30	490 6900

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Synaptobrevin superfamily		Synaptobrevin; Synaptobrevin.	-	121.492	4.13E-35	126 - 214	superfamily	250253
Synaptobrevin superfamily		Synaptobrevin; Synaptobrevin.	-	121.492	4.13E-35	126 - 214	superfamily	250253
Longin superfamily		Regulated-SNARE-like domain; Longin is one of the approximately 26 components required for...	-	91.0818	1.24E-23	28 - 110	superfamily	258059
Longin superfamily		Regulated-SNARE-like domain; Longin is one of the approximately 26 components required for...	-	91.0818	1.24E-23	28 - 110	superfamily	258059
SNC1		Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]	-	75.5428	4.03E-17	1 - 189	multi-dom	227472

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
803		Not available	208589	183079	448861	Cre06.g278172.t1.1	AT5G22360.1	316227

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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