PHATRDRAFT_27082 suppressor of ty (Spt4)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_27082	chr_7	suppressor of ty (Spt4)	370245	370646	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0270

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0046	0.37	0.0024 2700

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Spt4		Transcription elongation factor Spt4; Spt4 is a transcription elongation factor. Three...	cl12033	136.214	5.32E-42	33 - 126	specific	153422
Spt4 superfamily		Transcription elongation factor Spt4; Spt4 is a transcription elongation factor. Three...	-	136.214	5.32E-42	33 - 126	superfamily	264517

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
32339		Not available	222521	311932	225177	Cre02.g116300.t1.2	AT5G08565.1	353836

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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