PHATRDRAFT_39864 rna binding s1 domain protein (HHH_3)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_39864 chr_21 rna binding s1 domain protein (HHH_3) 225990 229265 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0027

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0046
 0.37

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HHH_3 Helix-hairpin-helix motif; The HhH domain is a short DNA-binding domain. cl19066 71.3265 6.19E-15 539 - 598 specific 257337
ENDO3c superfamily endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase... - 71.3265 6.19E-15 539 - 598 superfamily 267419
S1_like superfamily S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated... - 59.95 5.83E-11 727 - 786 superfamily 263921
Tex_N superfamily Tex-like protein N-terminal domain; This presumed domain is found at the N-terminus of Bordetella... - 56.7181 2.30E-09 70 - 241 superfamily 255322
UPF0081 superfamily Uncharacterized protein family (UPF0081); Uncharacterized protein family (UPF0081). - 36.7684 0.00684446 457 - 507 superfamily 266606
UPF0081 superfamily Uncharacterized protein family (UPF0081); Uncharacterized protein family (UPF0081). - 36.7684 0.00684446 457 - 507 superfamily 266606

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 248971 284210 451884 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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