PHATRDRAFT_42625 phospholipase a-2-activating protein (WD40 superfamily)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_42625 chr_1 phospholipase a-2-activating protein (WD40 superfamily) 633392 635642 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0183

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0042
 0.42

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 139.007 1.34E-36 17 - 324 superfamily 238121
PFU superfamily PFU (PLAA family ubiquitin binding); This domain is found N terminal to pfam08324 and binds to... - 95.3749 5.79E-23 372 - 477 superfamily 255162
PUL superfamily PUL domain; The PUL (PLAP, Ufd3p and Lub1p) domain is a novel alpha-helical Ub-associated domain.... - 74.7133 5.18E-15 514 - 690 superfamily 254729
COG2319 FOG: WD40 repeat [General function prediction only] - 104.4 6.32E-24 32 - 324 multi-dom 225201

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
22319 Not available 227061 250736 Not available Not available AT3G18860.1 345470

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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