PHATRDRAFT_44900 glycerophosphodiester phosphodiesterase (GDPD_GsGDE_like)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_44900	chr_5	glycerophosphodiester phosphodiesterase (GDPD_GsGDE_like)	587906	589114	-

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0301

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0080	0.29	0.000000000039 26000

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
GDPD_GsGDE_like		Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria...	cl14615	357.938	2.70E-122	121 - 397	specific	176507
PI-PLCc_GDPD_SF superfamily		Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily;...	-	357.938	2.70E-122	121 - 397	superfamily	246675
UgpQ		Glycerophosphoryl diester phosphodiesterase [Energy production and conversion]	-	113.391	5.38E-29	124 - 395	multi-dom	223657

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	244085	258682	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments