PHATRDRAFT_46573 tpr repeat (TPR_12)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_46573 chr_10 tpr repeat (TPR_12) 763683 765767 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0476

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0257
 0.37

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TPR superfamily Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF... - 52.7676 1.76E-08 510 - 622 superfamily 238112
TPR superfamily Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF... - 52.7676 1.76E-08 510 - 622 superfamily 238112
TPR superfamily Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF... - 52.7676 1.76E-08 510 - 622 superfamily 238112
TPR superfamily Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF... - 52.7676 1.76E-08 510 - 622 superfamily 238112
TPR superfamily Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF... - 52.7676 1.76E-08 510 - 622 superfamily 238112
TPR superfamily Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF... - 52.7676 1.76E-08 510 - 622 superfamily 238112
TPR_10 Tetratricopeptide repeat; Tetratricopeptide repeat. cl17452 35.2334 0.00674283 296 - 337 specific 257701
TPR_10 superfamily Tetratricopeptide repeat; Tetratricopeptide repeat. - 35.2334 0.00674283 296 - 337 superfamily 266693
TPR_12 Tetratricopeptide repeat; Tetratricopeptide repeat. - 36.9714 0.00214673 596 - 664 multi-dom 257749
TPR_12 Tetratricopeptide repeat; Tetratricopeptide repeat. - 36.9714 0.00214673 596 - 664 multi-dom 257749

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
9945 Not available 262070 187077 100274 Cre12.g535800.t1.1 AT5G53080.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

Add comment

Log in to post comments