PHATRDRAFT_51214 (gltB)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_51214 chr_22 (gltB) 576784 581702 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0233

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0085
 0.45

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type. GltS is a homodimer... cl00319 619.156 0 82 - 503 specific 238365
Gn_AT_II superfamily Glutamine amidotransferases class-II (GATase). The glutaminase domain catalyzes an amide nitrogen... - 619.156 0 82 - 503 superfamily 260351
GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that... cl17186 490.13 6.80E-159 903 - 1265 specific 239202
TIM_phosphate_binding superfamily TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an... - 490.13 6.80E-159 903 - 1265 superfamily 266538
gltB_C gltb_C. This domain is found at the C-terminus of the large subunit (gltB) of glutamate synthase (... cl00239 436.574 3.19E-141 1323 - 1574 specific 238482
GXGXG superfamily GXGXG domain. This domain of unknown function is found at the C-terminus of the large subunit (gltB... - 436.574 3.19E-141 1323 - 1574 superfamily 260291
Glu_syn_central superfamily Glutamate synthase central domain; The central domain of glutamate synthase connects the amino... - 440.446 5.57E-142 536 - 837 superfamily 252865
Glu_syn_central superfamily Glutamate synthase central domain; The central domain of glutamate synthase connects the amino... - 440.446 5.57E-142 536 - 837 superfamily 252865
gltB glutamate synthase subunit alpha; Provisional - 1617.64 0 68 - 1573 multi-dom 236968

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
29861 Not available 167114 69793 467437 Cre12.g514050.t1.2 AT5G04140.2 352697

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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