PHATRDRAFT_54411 sugar (d-ribose) abc transporter (periplasmic binding protein) (Peripla_BP_4)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_54411 chr_7 sugar (d-ribose) abc transporter (periplasmic binding protein) (Peripla_BP_4) 208517 210434 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0410

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0222
 0.32

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I... cl10011 133.576 3.83E-35 31 - 294 specific 107249
Periplasmic_Binding_Protein_Type_1 superfamily Type 1 periplasmic binding fold superfamily; Type 1 periplasmic binding fold superfamily. This... - 133.576 3.83E-35 31 - 294 superfamily 263940
7tm_3 superfamily 7 transmembrane sweet-taste receptor of 3 GCPR; This is a domain of seven transmembrane regions... - 94.207 1.12E-21 346 - 600 superfamily 249499
7tm_3 superfamily 7 transmembrane sweet-taste receptor of 3 GCPR; This is a domain of seven transmembrane regions... - 94.207 1.12E-21 346 - 600 superfamily 249499
Peripla_BP_4 Periplasmic binding protein domain; This domain is found in a variety of bacterial periplasmic... - 136.277 2.71E-36 32 - 292 multi-dom 257732

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 137078 Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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