Thaps_bicluster_0032 Residual: 0.47
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.

Summary

Title Residual Model version Organism
Thaps_bicluster_0032 0.47 Thalassiosira pseudonana

Module Plots

Motifs

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Members

Displaying 1 - 57 of 57
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10024 hypothetical protein

10024 - hypothetical protein

GO Terms:

GO:0003700, GO:0005622, GO:0006355

CD Domains:

Go To Gene Page:

10024
10027 hypothetical protein

10027 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10027
10128 hypothetical protein

10128 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10128
10194 hypothetical protein

10194 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10194
10598 hypothetical protein

10598 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10598
10772 hypothetical protein

10772 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10772
11068 (PSA6) proteasome_alpha_type_6

11068 - (PSA6) proteasome_alpha_type_6

GO Terms:

GO:0004298, GO:0005839, GO:0006511, GO:0004299

CD Domains:

Go To Gene Page:

11068
11278 hypothetical protein

11278 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11278
11357 hypothetical protein

11357 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11357
11409 hypothetical protein

11409 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11409
11618 hypothetical protein

11618 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11618
11683 hypothetical protein

11683 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11683
11993 CGS_like

11993 - CGS_like

GO Terms:

GO:0006520, GO:0003962

CD Domains:

Go To Gene Page:

11993
12131 hypothetical protein

12131 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

12131
12206 Bestrophin superfamily

12206 - Bestrophin superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

12206
14555 COG0523

14555 - COG0523

GO Terms:

NA

CD Domains:

Go To Gene Page:

14555
19598 Tryp_SPc

19598 - Tryp_SPc

GO Terms:

GO:0004295, GO:0006508

CD Domains:

Go To Gene Page:

19598
2037 hypothetical protein

2037 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

2037
22976 PLN03199

22976 - PLN03199

GO Terms:

GO:0016491, GO:0006636, GO:0016020, GO:0016717, GO:0016213

CD Domains:

Go To Gene Page:

22976
23566 hypothetical protein

23566 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

23566
23596 TPR

23596 - TPR

GO Terms:

NA

CD Domains:

Go To Gene Page:

23596
24057 hypothetical protein

24057 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24057
24418 hypothetical protein

24418 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24418
25241 hypothetical protein

25241 - hypothetical protein

GO Terms:

GO:0003676, GO:0004402

CD Domains:

Go To Gene Page:

25241
25467 hypothetical protein

25467 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25467
2552 DUS_like_FMN

2552 - DUS_like_FMN

GO Terms:

GO:0008033, GO:0016491, GO:0050660, GO:0051341

CD Domains:

Go To Gene Page:

2552
2600 hypothetical protein

2600 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

2600
261453 (Tp_Hox8) regulator [Rayko]

261453 - (Tp_Hox8) regulator [Rayko]

GO Terms:

GO:0003677, GO:0003700, GO:0005634, GO:0006355

CD Domains:

Go To Gene Page:

261453
261803 LRR_RI superfamily

261803 - LRR_RI superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

261803
262180 hypothetical protein

262180 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

262180
263510 TOPRIM_TopoIIB_SPO

263510 - TOPRIM_TopoIIB_SPO

GO Terms:

GO:0003677, GO:0003918, GO:0005524, GO:0006259, GO:0006265

CD Domains:

Go To Gene Page:

263510
3056 hypothetical protein

3056 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

3056
31200 DSPc superfamily

31200 - DSPc superfamily

GO Terms:

GO:0006470, GO:0008138, GO:0004721

CD Domains:

Go To Gene Page:

31200
33676 DUF846

33676 - DUF846

GO Terms:

GO:0016021

CD Domains:

Go To Gene Page:

33676
33984 PKc_like superfamily

33984 - PKc_like superfamily

GO Terms:

GO:0004672, GO:0005524, GO:0006468, GO:0004713, GO:0004674

CD Domains:

Go To Gene Page:

33984
35381 hypothetical protein

35381 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

35381
37683 ANK

37683 - ANK

GO Terms:

NA

CD Domains:

Go To Gene Page:

37683
38153 B9-C2

38153 - B9-C2

GO Terms:

NA

CD Domains:

Go To Gene Page:

38153
4293 hypothetical protein

4293 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

4293
5180 hypothetical protein

5180 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5180
5272 hypothetical protein

5272 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5272
5580 hypothetical protein

5580 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5580
5855 AAA_12

5855 - AAA_12

GO Terms:

GO:0004197, GO:0006508

CD Domains:

Go To Gene Page:

5855
6294 hypothetical protein

6294 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

6294
6360 hypothetical protein

6360 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

6360
6576 hypothetical protein

6576 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

6576
7199 hypothetical protein

7199 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7199
7292 hypothetical protein

7292 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7292
7375 hypothetical protein

7375 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7375
7416 hypothetical protein

7416 - hypothetical protein

GO Terms:

GO:0003755, GO:0004600, GO:0030051, GO:0042027

CD Domains:

Go To Gene Page:

7416
7953 AIM24

7953 - AIM24

GO Terms:

NA

CD Domains:

Go To Gene Page:

7953
8111 VIT1

8111 - VIT1

GO Terms:

NA

CD Domains:

Go To Gene Page:

8111
8994 hypothetical protein

8994 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8994
913 hypothetical protein

913 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

913
9310 hypothetical protein

9310 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9310
9330 hypothetical protein

9330 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9330
9602 ATPase-IIIA_H

9602 - ATPase-IIIA_H

GO Terms:

NA

CD Domains:

Go To Gene Page:

9602

GO Enrichment

GO ID Go Term p-value q-value Cluster
GO:0006265 DNA topological change 0.0265779 1 Thaps_bicluster_0032
GO:0006636 fatty acid desaturation 0.0318146 1 Thaps_bicluster_0032
GO:0006259 DNA metabolism 0.0370252 1 Thaps_bicluster_0032
GO:0008033 tRNA processing 0.047369 1 Thaps_bicluster_0032
GO:0006520 amino acid metabolism 0.0550594 1 Thaps_bicluster_0032
GO:0051341 regulation of oxidoreductase activity 0.0601545 1 Thaps_bicluster_0032
GO:0006470 protein amino acid dephosphorylation 0.0677496 1 Thaps_bicluster_0032
GO:0006511 ubiquitin-dependent protein catabolism 0.128874 1 Thaps_bicluster_0032
GO:0006508 proteolysis and peptidolysis 0.179105 1 Thaps_bicluster_0032
GO:0006355 regulation of transcription, DNA-dependent 0.197871 1 Thaps_bicluster_0032

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