11545 SCP superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
11545 chr_20 SCP superfamily 431636 432428 - SCP superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7448543 Thaps11545.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0305

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0209
 0.34

Most Highly Correlated Transcripts

bd1803

(bd1803) NA
0.9332

bd1891

(bd1891) COG3899
0.8701

bd1821

(bd1821) NA
0.8156

7378

leucine-rich repeat protein
0.8131

bd1749

(bd1749) NA
0.8087

bd739

(bd739) NA
0.8049

3228

hypothetical protein
0.8034

bd945

(bd945) COG3899
0.7985

bd954

(bd954) NA
0.7985

bd740

(bd740) NA
0.7908

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SCP superfamily SCP: SCP-like extracellular protein domain, found in eukaryotes and prokaryotes. This family... - 75.7094 2.30E-17 86 - 215 superfamily 260208

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005576 -

GO:0005576

extracellular region

Details: 
The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
GO Category: 
CC

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