12050 Mem_trans superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
12050 chr_23 Mem_trans superfamily 252460 253738 - Mem_trans superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7448884 Thaps12050.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0354

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0005
 0.39

Most Highly Correlated Transcripts

bd1946

(bd1946) NA
0.8688

bd930

(bd930) HA
0.8608

bd453

(bd453) Mito_carr
0.8604

bd1877

(bd1877) NA
0.8579

bd933

(bd933) NA
0.8526

bd1840

(bd1840) NA
0.8502

7335

hypothetical protein
0.8459

bd153

(bd153) NA
0.8452

bd1835

(bd1835) NA
0.8287

10947

hypothetical protein
0.8285

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Mem_trans superfamily Membrane transport protein; This family includes auxin efflux carrier proteins and other... - 69.6294 1.45E-13 251 - 414 superfamily 263725

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Cre17.g698700.t1.1 Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005554 GO:0016021 -

GO:0005554

NA

Details: 
NA
GO Category: 
NA

GO:0016021

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

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