1217 (Tp_Myb1R2) SANT_TRF
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
1217 chr_1 (Tp_Myb1R2) SANT_TRF 950607 952703 - SANT_TRF

Synonyms

NCBI ID Ensembl Genomes exon ID
7445045 Thaps1217.2, Thaps1217.1, Thaps1217.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0215

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0246
 0.41

Most Highly Correlated Transcripts

4512

hypothetical protein
0.9208

10002

Solute_trans_a superfamily
0.9132

6552

hypothetical protein
0.897

3803

hypothetical protein
0.894

7942

hypothetical protein
0.8937

5066

hypothetical protein
0.8926

7967

2A0106
0.8911

1819

hypothetical protein
0.8857

6402

hypothetical protein
0.8851

21425

hypothetical protein
0.883

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SANT_TRF superfamily Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family; Human telomere... - 72.2147 1.19E-15 574 - 624 superfamily 212558
SANT_TRF superfamily Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family; Human telomere... - 72.2147 1.19E-15 574 - 624 superfamily 212558

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_48573 PHATRDRAFT_48573 235808 Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003677 GO:0005634 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

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