7967 2A0106
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
7967 chr_9 2A0106 389292 391088 + 2A0106

Synonyms

NCBI ID Ensembl Genomes exon ID
7449309 Thaps7967.3, Thaps7967.2, Thaps7967.4, Thaps7967.5, Thaps7967.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0079

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0213
 0.25

Most Highly Correlated Transcripts

23522

DUF1032 superfamily
0.9116

1365

hypothetical protein
0.9086

263515

RimL
0.9053

10002

Solute_trans_a superfamily
0.9029

36592

HMGB-UBF_HMG-box
0.8998

23033

NADB_Rossmann superfamily
0.8978

7942

hypothetical protein
0.8974

bd758

(bd758) NA
0.8969

33955

Pkinase
0.8954

21425

hypothetical protein
0.8941

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
MFS superfamily The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that... - 85.4433 1.40E-18 86 - 452 superfamily 119392
MFS superfamily The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that... - 85.4433 1.40E-18 86 - 452 superfamily 119392
2A0106 metabolite-proton symporter; This model represents the metabolite:H+ symport subfamily of the major... - 271.838 6.37E-86 37 - 439 multi-dom 233168

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005524 GO:0016887 GO:0005215 GO:0006810 GO:0016021 GO:0008733 -

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0016887

ATPase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
GO Category: 
MF

GO:0005215

transporter activity

Details: 
Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
GO Category: 
MF

GO:0006810

transport

Details: 
The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0016021

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

GO:0008733

L-arabinose isomerase activity

Details: 
Catalysis of the reaction: L-arabinose = L-ribulose.
GO Category: 
MF

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