13920 PAP_central
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
13920 chr_5 PAP_central 272081 273901 - PAP_central
NCBI ID Ensembl Genomes exon ID
7449648 Thaps13920.2, Thaps13920.1, Thaps13920.3
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0259
(bd875) NA
0.9341
MA3
0.9219
Sec7
0.9188
(APB3) Adaptin_N
0.9136
Peptidase_C19 superfamily
0.9087
Sugar_tr
0.9064
C2 superfamily
0.9063
(Tp_Myb2R9) PLN03142
0.9056
GH18_chitinase-like superfamily
0.8997
hypothetical protein
0.8993
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
NT_PAP_TUTase Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases; Poly(... cl11966 81.0643 2.45E-18 59 - 174 specific 143392
Rel-Spo_like superfamily RelA- and SpoT-like ppGpp Synthetases and Hydrolases, catalytic domain; The Rel-Spo superfamily... - 81.0643 2.45E-18 59 - 174 superfamily 264491
PAP_RNA-bind superfamily Poly(A) polymerase predicted RNA binding domain; Based on its similarity structurally to the RNA... - 70.3726 2.51E-14 381 - 516 superfamily 252881
PAP_central Poly(A) polymerase central domain; The central domain of Poly(A) polymerase shares structural... - 362.744 8.45E-121 18 - 379 multi-dom 252883
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_12234 PHATRDRAFT_12234 203479 242988 445487 Cre10.g433750.t1.1 AT1G17980.1 474162
KEGG description KEGG Pathway
mRNA surveillance pathway map03015
GO:0003676 GO:0004652 GO:0006350 -

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

polynucleotide adenylyltransferase activity

Details: 
Catalysis of the template-independent extension of the 3'- end of an RNA or DNA strand by addition of one adenosine molecule at a time. Cannot initiate a chain 'de novo'. The primer, depending on the source of the enzyme, may be an RNA or DNA fragment, or oligo(A) bearing a 3'-OH terminal group.
GO Category: 
MF

NA

Details: 
NA
GO Category: 
NA
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