1889 PRK00529
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
1889 chr_1 PRK00529 2666602 2667707 + PRK00529

Synonyms

NCBI ID Ensembl Genomes exon ID
7445100 Thaps1889.2, Thaps1889.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0048

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0156
 0.33

Most Highly Correlated Transcripts

1888

hypothetical protein
0.9224

5293

PRK00772
0.895

18796

UMP_CMP_kin_fam
0.8674

21939

Aldo_ket_red
0.8646

9466

DER1 superfamily
0.863

270372

hypothetical protein
0.8613

4524

DHQS
0.8591

4604

hypothetical protein
0.8582

268062

PRK14293
0.8581

1539

hypothetical protein
0.8522

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
S1_EF-P_repeat_2 S1_EF-P_repeat_2: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1. EF-... cl09927 82.5718 1.56E-20 216 - 271 specific 240220
S1_like superfamily S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated... - 71.3351 1.89E-16 152 - 213 superfamily 263921
S1_EF-P_repeat_1 S1_EF-P_repeat_1: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1. EF-... cl09927 71.3351 1.89E-16 152 - 213 specific 239916
S1_like superfamily S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated... - 71.3351 1.89E-16 152 - 213 superfamily 263921
EFP_N superfamily Elongation factor P (EF-P) KOW-like domain; Elongation factor P (EF-P) KOW-like domain. - 72.7977 4.42E-17 90 - 146 superfamily 254661
EFP_N superfamily Elongation factor P (EF-P) KOW-like domain; Elongation factor P (EF-P) KOW-like domain. - 72.7977 4.42E-17 90 - 146 superfamily 254661
PRK00529 elongation factor P; Validated - 234.947 2.82E-77 88 - 271 multi-dom 234788

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_41511 PHATRDRAFT_41511 198426 222979 458706 Cre16.g691000.t1.2 AT3G08740.1 554380

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003746 GO:0006414 -

GO:0003746

translation elongation factor activity

Details: 
Functions in chain elongation during polypeptide synthesis at the ribosome.
GO Category: 
MF

GO:0006414

translational elongation

Details: 
The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis.
GO Category: 
BP

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