19345 HepA
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
19345 chr_11a HepA 440817 441728 + HepA

Synonyms

NCBI ID Ensembl Genomes exon ID
7448320 Thaps19345.1, Thaps19345.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0076

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0099
 0.44

Most Highly Correlated Transcripts

bd843

(bd843) NA
0.9498

bd529

(bd529) SNF2_N
0.9441

bd950

(bd950) NA
0.9426

bd1983

(bd1983) RecA-like_NTPases superfamily
0.9384

bd439

(bd439) POLBc_alpha
0.9369

bd758

(bd758) NA
0.9272

bd890

(bd890) NA
0.9209

bd1214

(bd1214) KISc_C_terminal
0.916

bd1078

(bd1078) NA
0.9159

bd211

(bd211) Maf_Ham1 superfamily
0.9135

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 103.086 3.51E-27 106 - 231 superfamily 238034
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 103.086 3.51E-27 106 - 231 superfamily 238034
HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and... - 176.464 4.65E-50 9 - 270 multi-dom 223627

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 187492 187046 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005524 GO:0008026 GO:0003676 GO:0004386 -

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0008026

ATP-dependent helicase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix.
GO Category: 
MF

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

GO:0004386

helicase activity

Details: 
Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.
GO Category: 
MF

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