20620 Nucleoporin_C superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
20620 chr_1 Nucleoporin_C superfamily 425929 432395 - Nucleoporin_C superfamily

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0251

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0014
 0.46

Most Highly Correlated Transcripts

bd624

(bd624) Glyco_transf_34 superfamily
0.9479

bd1465

(bd1465) PKc_like superfamily
0.9461

bd446

(bd446) HrpA
0.943

bd392

(bd392) DEXDc
0.8776

12899

AAA
0.8721

bd1949

(bd1949) NA
0.8719

23753

hypothetical protein
0.8704

bd894

(bd894) Peptidase_M14_like superfamily
0.8657

bd719

(bd719) NA
0.8648

9912

hypothetical protein
0.8631

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Nucleoporin_C superfamily Non-repetitive/WGA-negative nucleoporin C-terminal; This is the C-termainl half of a family of... - 89.5063 1562 - 1798 superfamily 251780

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_35311 PHATRDRAFT_35311 227363 210312 Not available Not available Not available 297338

KEGG

KEGG description KEGG Pathway
RNA transport map03013

GO Terms

GO:0003700 GO:0005622 GO:0006355 -

GO:0003700

sequence-specific DNA binding transcription factor activity

Details: 
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO Category: 
MF

GO:0005622

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

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