20796 Sec23_helical
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
20796 chr_1 Sec23_helical 1323460 1327878 + Sec23_helical
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0248
COG3899
0.9181
SNF2_N
0.8965
SLAC1
0.8927
DENN superfamily
0.8836
DUF1325 superfamily
0.8795
hypothetical protein
0.8795
ANK
0.8777
G_glu_transpept
0.8758
NAD_binding_8 superfamily
0.8757
hypothetical protein
0.8757
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Sec23_helical superfamily Sec23/Sec24 helical domain; COPII-coated vesicles carry proteins from the endoplasmic reticulum to... - 82.5793 3.33E-18 1076 - 1176 superfamily 252815
Sec23_helical superfamily Sec23/Sec24 helical domain; COPII-coated vesicles carry proteins from the endoplasmic reticulum to... - 82.5793 3.33E-18 1076 - 1176 superfamily 252815
Sec23_BS superfamily Sec23/Sec24 beta-sandwich domain; Sec23/Sec24 beta-sandwich domain. - 74.8566 8.84E-16 960 - 1062 superfamily 254596
Sec23_BS superfamily Sec23/Sec24 beta-sandwich domain; Sec23/Sec24 beta-sandwich domain. - 74.8566 8.84E-16 960 - 1062 superfamily 254596
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_48220 PHATRDRAFT_48220 253935 16043 Not available Not available Not available Not available
KEGG description KEGG Pathway
Not available Not available
GO:0005515 GO:0006886 GO:0006888 GO:0030127 -

protein binding

Details: 
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO Category: 
MF

intracellular protein transport

Details: 
The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO Category: 
BP

ER to Golgi vesicle-mediated transport

Details: 
The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi.
GO Category: 
BP

COPII vesicle coat

Details: 
One of two multimeric complexes that forms a membrane vesicle coat. COPII is best characterized in S. cerevisiae, where the subunits are called Sar1p, Sec13p, Sec31p, Sec23p, and Sec24p. Vesicles with COPII coats are found associated with endoplasmic reticulum (ER) membranes at steady state.
GO Category: 
CC
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