20985 COG5593
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
20985 chr_1 COG5593 2371073 2374241 + COG5593

Synonyms

NCBI ID Ensembl Genomes exon ID
7445666 Thaps20985.3, Thaps20985.1, Thaps20985.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0220

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0193
 0.22

Most Highly Correlated Transcripts

32374

TPR
0.969

268130

hypothetical protein
0.9582

25129

hypothetical protein
0.9558

33425

BMS1
0.953

4624

SrmB
0.9517

23862

Syo1_like superfamily
0.9515

268735

(GPB1) WD40
0.9498

21082

Cupin_8 superfamily
0.9484

2772

Utp14
0.9447

40884

(RPA1) RNAP_I_RPA1_N
0.9405

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
CBF superfamily CBF/Mak21 family; CBF/Mak21 family. - 131.584 5.94E-35 469 - 631 superfamily 252241
CBF superfamily CBF/Mak21 family; CBF/Mak21 family. - 131.584 5.94E-35 469 - 631 superfamily 252241
COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal... - 211.824 1.47E-57 119 - 793 multi-dom 227880

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_50630 PHATRDRAFT_50630 224260 320606 451177 Cre10.g459600.t1.1 AT1G72440.1 351404

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

Add comment

Log in to post comments